Array 1 69459-72781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOS01000142.1 Methanosarcina mazei strain 2.F.A.2.4 scaffold8_1_size81632-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69459 29 100.0 32 ............................. AATTTGTTCTTACTCCGATGAGGCCGTATGAT 69520 29 100.0 32 ............................. GTTTTCCCTCCTGCTACGGCTTTTATGGCATT 69581 29 100.0 32 ............................. CATGGACTGAAAATTATAATTCGCCCTACTAC 69642 29 100.0 32 ............................. ATATTCGGGCATCGTAAGACCTTGCATAATCC 69703 29 100.0 32 ............................. TCACAAAATCGACTAAAATATCTGCCGGGGCA 69764 29 100.0 32 ............................. GTGATGCAAGCCAGCATGTCCCTCGATTACAG 69825 29 100.0 32 ............................. GCATATCCAGCACAGACGCGGGAAAGGTAATT 69886 29 100.0 32 ............................. GAAAAAATTAGTATTGTCTAGGAACTCAATTA 69947 29 100.0 32 ............................. GCTCTATGAGTATGAGGCTGTGGACATAGCCT 70008 29 100.0 32 ............................. TAGTTTATATACATCTTACACCAATGCGTAAG 70069 29 100.0 32 ............................. TAATCCTTGACATCTTAATTTTATAATCTCCT 70130 29 100.0 32 ............................. TCCCCCGTAGGATGTACGAATCTTGGAAAGTA 70191 29 100.0 32 ............................. AATTCGAGATCAGTATAGGCAACATAGGGACC 70252 29 100.0 32 ............................. GATCTGCCGTAGATGCTGCACTATCGTCACTG 70313 29 100.0 32 ............................. TATTGCTAGTTCACGGGCACTAAGATCTTCAC 70374 29 100.0 32 ............................. TATGCGGAACAGTCCTTCAGGGCAATGCTGAG 70435 29 100.0 32 ............................. GAACTTAAGAAGGCCTGCAAATGAAAGCAGGT 70496 29 100.0 32 ............................. AAGGGTCTTTAACCTCTTCTTCTTTGTTTTCA 70557 29 100.0 32 ............................. ATGCAATGTGTGAGCAGATACGCAGACCCCGA 70618 29 100.0 32 ............................. CCGAATTCGCATATAAAACGATGTCAGATGAT 70679 29 100.0 32 ............................. CTGTAATGCAATGCCTAGTTTTATATCCTCGA 70740 29 100.0 32 ............................. TTCGCGTTTCCATAATCATGAGAACGGAACAG 70801 29 100.0 32 ............................. GCTGCCAACTTGTCCGGCGGGTTGCAAACATT 70862 29 100.0 32 ............................. AGTCATTGCTCCAGCTCCAAACTACTATATTT 70923 29 100.0 32 ............................. TCATTAAACGATTTCTAAAATTCTCAGTACAA 70984 29 100.0 32 ............................. GAATGAACCGGGGACATAATGAGTAAAGTATC 71045 29 100.0 32 ............................. TCACAGGCAGATTTCATTGAGGCTGCAAAAAA 71106 29 100.0 32 ............................. TTACACTGTTTTTACAGGAGATGCTACAGCAG 71167 29 100.0 32 ............................. TACAGAGTACTGGCAATCGTAGAACAGAAACG 71228 29 100.0 32 ............................. ACGGCATCTGTATCAAAATGCAATCAGGTGAA 71289 29 100.0 32 ............................. TTTGAAATTTGCTGCTGTTACTACCATATGTT 71350 29 100.0 32 ............................. CTCATGCACATGCCTGTTGTTTCTGCAGTAAT 71411 29 100.0 32 ............................. TGATCGTTCTGCTGAGAATGGGCCAATTCCGC 71472 29 100.0 32 ............................. TGTTCAGCCTGCCTATCGCCCAGATCCCCGGC 71533 29 100.0 32 ............................. ACGGGATTGAAAATACCATTATTGATAACATC 71594 29 100.0 32 ............................. GACTCGAACCTTCATCACACGACCGATCGGAA 71655 29 100.0 32 ............................. ACCCTTTTATTGAATCATCAACGACACAAATA 71716 29 100.0 32 ............................. TTACCCCAGTCAGTAGACTAAACGTTATTAAT 71777 29 100.0 32 ............................. GCCCTGTGGAGTTAGAACAGGAACTGCGGTTT 71838 29 100.0 32 ............................. AGTGTAAAAGAGAGTATGGGTCCTCTCTTATT 71899 29 100.0 32 ............................. TTAAATGATGGGCTACACTGTTACGGATTGGA 71960 29 100.0 32 ............................. CCTACGTTATTTCAGGTGCTCCCCAAATATCA 72021 29 100.0 32 ............................. TTATTCTGAGTGACGGGACTACGTGGAGACTG 72082 29 100.0 32 ............................. TCTATTTTCTTTCCATTCCTGACGAGCTTCTT 72143 29 100.0 32 ............................. ACACCACTCTTTCCCTCAATGTCGTCGCTGGA 72204 29 96.6 32 ............................T ATTGCAGCATCTCTCAAAATGAAAACCCTGTG 72265 29 100.0 32 ............................. TTGAGAGAGAAACTTTAGATATTGTACTGGAT 72326 29 100.0 32 ............................. TCTGGAATCATACAAGTAATGTATATTTATAT 72387 29 100.0 32 ............................. CCCCCTTGCTTTAGCGGTGTGAGGAATTCCGT 72448 29 100.0 32 ............................. CCTCCGAAATTGCATTACTTAATCTAGTTGCG 72509 29 100.0 32 ............................. TACCGCTAGGTAAGGAAAAGCGTTATGTGTTA 72570 29 100.0 32 ............................. CCCCTGATCTGTGATTATTCCCACGATTTTAA 72631 29 100.0 32 ............................. GCTATGAACAATAATAGACATGCTATATCAAA 72692 29 100.0 32 ............................. CAGGTATTTAAAAAACGGCAGGGATCAAAAAC 72753 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 55 29 99.8 32 GAGTTCCCCACACACGTGGGGATGAACCG # Left flank : TGCTGGAGGTCTTACTATTCCAGAGGAACCGCCTGAAGCTATTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAATACAACTCCTAGATTAAGAGGAAGACTTACTCTCTGGCTTCTCGAAATCAGAGCAGGAGTGTATGTGGGAGATTACTCGGTAAAAGTACGGGATATGATATGGGAGAATGTAGAAGCTGAGTTCAATGATGGAAACATCCAAGGAAGTGCCATTATGATATGGTCTGCAAGAAACGAAATAGGATTTGATTTTAAAGTCCTCGGCGAAAACCGCAGAATCCCAAGAGAAATGGACGGAATAAAGTTAATATCCTTCATGCCCGAAATAAAGACAGAAGAGTAAATTAGCCGGAGATACCATGCTGTTAAAATATTTTCTATTATATAATAAATTTAATATCAAGAATGTTTTATATGTCCCCGGAAAAACTTTTCCTCTTTTTAGTATAAAAGACAAAGA # Right flank : GAAGGTGGTCTAATTATCGCAGTTTATTCCATCTAATTCGCAAGCAAGATCCACTAAAACAAGGATTGAAGCTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37507-40662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOS01000126.1 Methanosarcina mazei strain 2.F.A.2.4 scaffold22_1_size49711-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 37507 37 100.0 38 ..................................... TCCGCTCTTGGATCGTAATGTTCTATTACGTAGGTCAT 37582 37 100.0 38 ..................................... TTACAAAGGCGCGCCCTGATCGCCTAAGAGCTCCCGTA 37657 37 100.0 37 ..................................... AAAACTTCATCGTGGACAGGACTTGAAAACGTAGATG 37731 37 100.0 35 ..................................... ACAATACTTTCGCTAATACTGGCTGGCATGGGATT 37803 37 100.0 36 ..................................... ATAATCCAGGAGCGAGAGGACCGGAAAGAAGGCGAA 37876 37 100.0 35 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAG 37948 37 100.0 38 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTGGG 38023 37 100.0 33 ..................................... AAATGATGTCTTGATACATATCTTAGTTTTGTT 38093 37 100.0 34 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCATACAC 38164 37 100.0 35 ..................................... TACGGACTGGAATTAAACACGGCTTCAAAGGCGAT 38236 37 100.0 36 ..................................... ATAGCGATTGTATGAACTCCGTGAACATCCTTCGGT 38309 37 100.0 35 ..................................... ATCTCCCTCTCTTTTTCATCTAGAGAATTCCGCAA 38381 37 100.0 34 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATT 38452 37 100.0 35 ..................................... CGGGTTCCACATGAACATGGATAGTACATGTTATA 38524 37 100.0 35 ..................................... TCTAATGTCAACTCTATGTATAAGTATGTACTATT 38596 37 100.0 35 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGG 38668 37 100.0 35 ..................................... ATCGCGTTCAGGTGCGAAGTTCCCATATCCTCCTT 38740 37 100.0 34 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTT 38811 37 100.0 35 ..................................... TGGATTCCTCCGAACGAATCAGTAGCTACAGGCAG 38883 37 100.0 36 ..................................... AAATTTTGATTCCTGGACGTTCTGAGCAGAAAATAG 38956 37 100.0 35 ..................................... CAGCTACTCCTGTAAAATCGTACACCGTTGTAGAA 39028 37 100.0 35 ..................................... TTGTTTACATCTATCATTTTCAATGAAAACGCAAG 39100 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGTCCGGTCATTTTCTTA 39173 37 100.0 37 ..................................... TAAAAAGAGTAAATGCGTTTTTTGCAGCTAGAGAACT 39247 37 100.0 35 ..................................... ACATACTCAAGTGCTTCAGGTGCAACGACAATAAG 39319 37 100.0 34 ..................................... AATATAATCAACATGGATACACATACATGAAAAA 39390 37 100.0 37 ..................................... CAATATCTTAAGGCTAAGTCCTTCAGAGCTGCACCTT 39464 37 100.0 35 ..................................... AGGCTATGCGTTTCTTAACTCGATTGTTCTATAGA 39536 37 100.0 35 ..................................... TGAACCGAGGGAAGATGATTGAATATATCTTACTT 39608 37 100.0 37 ..................................... GGTGAAATCAATAATAAGACTTTTGCGAAGAAAATTA 39682 37 97.3 38 .....T............................... TCTGTGATAAAAACATAAACTCAGCAAAAGGTGATTTC 39757 37 97.3 35 .....T............................... TAAAATTTGACTGTTGAATTAATTTCGATGTTGTT 39829 37 97.3 38 .....C............................... CCGAACGTATTGTATTTGGTGGATTATACGACGGTAAT 39904 37 97.3 35 .....C............................... TTATTTAGATCGAAATGTCCTAAAATACCAGCTGC 39976 37 97.3 34 .....C............................... AAATAGCATTAACCTGTTTTGCTTCATCTTCGGT 40047 37 97.3 35 .....C............................... TACTCTTGATGCTTCAGCAAAAACAATATTACTCA 40119 37 97.3 34 .....C............................... AAATGCGACGGACACAGCCATTCAGATGATGTAC 40190 37 97.3 37 .....C............................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 40264 37 97.3 36 .....C............................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 40337 37 97.3 35 .....C............................... CACTATACAGAAACTTGCAGAAATTACACGATACA 40409 37 97.3 35 .....C............................... GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 40481 37 97.3 37 .....C............................... GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 40555 37 97.3 34 .....C............................... TATAAATCGCATCACATCAAGATCACTGCAAGGA 40626 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ====================================== ================== 44 37 99.1 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CCTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 48354-48686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOS01000126.1 Methanosarcina mazei strain 2.F.A.2.4 scaffold22_1_size49711-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 48354 37 75.7 39 .CT.CA..ACG.......GC................. TTTGATTTAGGGGCAAGGATCCATTGTCTGTTCGCTCGT 48430 37 100.0 35 ..................................... CATATTGAAAAAATGAGAGAGGATCGGATTTTATT 48502 37 70.3 37 A.TCGTG..C.AGA....T.................. AGTGAAATGGGGTTTTTCAGTTTGAAGGTTTTTCCTT 48576 37 91.9 37 .........C..................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 48650 37 59.5 0 A.TCGAT.AC.AGA....T........A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 79.5 37 GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : TATTACTTTATCATTGTCAAAATCAGGAAAAATTCTACAAGGTTATTGATCTTAAAGATCCTCGTGAAGTAAGTTATGAATCTGAGACTTATGTAATTGCTCCTAAAACTATTCCAGAAGATCTTAACTTGGATGGCGGGAAAAAGTTAATCCTGCATATTGTCATATCTGCTCGCCATGTTGAAAACTTTCGGTTACATGATGATCATTTTAATGCAACCAATGTTGCTATAGTTTATAATGTAGACCTAGAGCCTAAAGATGACTGGTTACCTTACGTTCAGGAAATAGTTGAAATAGCAAAACCATTGATCCATCGTTATGAAGATGTTGATGTTTGTCTAATTTGCCCTTCAGTCGTAGCTTTTGCACTTGGAATGGCTTTCTCAAGAAAAGGATCTTTAAAAGTCTGTCATTATTTTAGTGATGGAAAATATAGGCCTGTATTTCAACTCTCCGAGATAGAAGGTCACCCCCCTTTCAGTTAACTGTGAGCTAGA # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCCAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATACGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:3, 4:-0.03, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //