Array 1 68416-67908 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWA01000018.1 Photorhabdus heterorhabditis strain SF41 scaffold_0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68415 28 100.0 32 ............................ CTTCTATGTAGTCAAAGTAAACAATGTTCATA 68355 28 100.0 32 ............................ AGTCAATGCCGACATTAGCATTGATACCGTAC 68295 28 100.0 32 ............................ TTTAACAACTCCCTTCGAAGCGGGGATTTTTG 68235 28 100.0 32 ............................ GGTATTAATCGTAATGAAATTCTCATAATTCT 68175 28 100.0 32 ............................ TGCCAAGAATTCCCTGTTGTTTTCCCGGTGTG 68115 28 100.0 32 ............................ TCTATATTAGCCATCCATGGCATTGCATTATT 68055 28 100.0 32 ............................ TGGAGAAGGCGCTGAGCCTTTAGATGAATAAT 67995 28 100.0 32 ............................ CAGTTAAACGGCAAAGAGGATAACCCCCCGGT 67935 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTAAATGATTACCAACAAGAAAAGCAGTTTCGGAGAGATTGACTTCCATGGCAATAGATAATAGTGCCTCATTTGAAAGCCAATTATCCAATATAACAACAGCGGCTGGATTGCCAGAAAATAGGTGATCTGTGAATGCATCAACATGATAGATGGGTAGTGAAGTCATTTAATTCTCTCTTAAAATAGAATTATCTATAGGGTTATGAAAAGGGATCAATGTTTTTAATTTTTATTCAAAAATTACCCGCTATTTTATACAACTATATGTAATTGGAAAGAGAGTAAGCTGCACAGTTTTAAAATATTTAGTTGGTTTACCGAAACATTGGGTATCATTGTGTTAACCAGATATGGGACCCTATTTTGACCCTTTTTTTGTGGTTTGTTATAACTTGTTGATTTATCTATAATATTATTTGGTGCTTATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAGTATCTAACA # Right flank : TCGATTGAATGCGCTAAATGCTTCCGTCTAAATATGCATCATTTCTTGTGCTTCTGAGCATATTCTTCACTATTAACCCATTGATGATCCTTTTCCCAAGTAAATAACCAATTACGGGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTCGTAACCGGCAATGGTTGCTACCGGATGATAGCCTTTGGGAACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCGTCGGTATAGATGCGTTGTATACAGAATCCCTGAGGTGGGTTTAAACGATGATAATAGGTTTCTTCCAGATAGGTTTCCTGTGGTTGATTATCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTACAACCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCCGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGCTGGTTATAGCCATTTCCACGTTGTTCTGCATCAATATCCTGTGGTGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 79603-78614 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWA01000018.1 Photorhabdus heterorhabditis strain SF41 scaffold_0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79602 28 100.0 32 ............................ TACGGAGTGCAGACTTGGACTTAACTATTGTG 79542 28 100.0 32 ............................ TCCTGACATGGTCGTCAGAATAACTGCCTTCA 79482 28 100.0 32 ............................ AAAGGCGATCAATTTCTTTTATTCCGATGTGA 79422 28 100.0 33 ............................ CGCCTGGCATTTGCTAATCCTGTTTTGATTGGT 79361 28 100.0 32 ............................ TGATAACCAATGAACGCCCCTGACCTTGCCGT 79301 28 100.0 32 ............................ TTGCGTAGAGCTTAAGGCGTCTCCAGCAAAAA 79241 28 100.0 32 ............................ CGCTCAAGGTGTTTGTCCATTTCTAGCTTGAT 79181 28 100.0 32 ............................ ATCAGAAAAGTTATTTTTGTATAACATTAAAA 79121 28 100.0 32 ............................ ACCGGCGAACACCTGGCCGCACAGCTGCAGGA 79061 28 100.0 32 ............................ ATAGACCTTTAGCTTCAACAATTATACCATTA 79001 28 100.0 32 ............................ CCGATCATCTGAATAAACGGTAGGGTCTGAGT 78941 28 100.0 32 ............................ TGAGTTAACTCACTCGTGATGAACGACTCCAC 78881 28 100.0 32 ............................ CCATTCTCGATTTTGAATGATTGACCGAAGCG 78821 28 100.0 32 ............................ TACCCCACAGCGTTTCACGTGACACACGTTCC 78761 28 100.0 32 ............................ GTTACAGTACACAAGGAAGAACTGCATCAAAT 78701 28 100.0 32 ............................ AGTTGTGGCTCGTTTGAATAATGACGGTGATA 78641 28 89.3 0 ......................G...GT | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAATGTAAAAAATGTGGGATAGTAAAAATCGTAATAAATTATTTAAAGGAATTCGAGTTTTATTTGTAGGGCAATAATATTACACCCATTACTTTCATCCAGAGTTATTTAATTCTATTTTTATATGGTAATTATATAAGAAGAGAATGAAATATGATGTATTCAGTTAAAAGTGGCTAATATCACACGTTGGTAAATATACTTAAAAATATTAGGTCAGCATATTCTAAATAGAGTGAGAATAAAATTTATCTTATTTGATGGTTCTATCATGGCTGAACGTTTTGCGATCAATTCTTTCACTTACTGCATAGACATTAGAACGGGCGATTTAAGTGAGTGATGGTATTTTTACTAAACCCTATTTTTACCCTTTTTTTTGAGGTGAATTATAACTAATTGATTTTATAGTAAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTATGCTCTTTGAAAATTAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAATCACTCTCGTTCGGTAAAAGCCTTATATTGTAGGTTGGTAAAGAATTGTAAATTATTATGATTTGCATGTGCGATATTTTACCTTGTATAAAATTTATGCATAATGTTTTCCATAAGTTAAATTAACTATTCAGGTAATTCTTAATTATGGATAACAGCTTTTCTCCAAGTGACCTCAAAACGATTTTGCATTCCAAACGCTCTAATATTTATTACCTGCAATATTGCAGAATATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTATATTGGAATATTCCAATTGCAAATACCACGGTAATTATGTTGGGAACGGGGACTTCTATTACTCAGGCGGCAATGCGTGAATTTGCTAAGGCAGGGGTTTTGGTCGGTTTTTGTGGTGGTGGAGGTTCACCACTGTTTGCGGCTAATGAGGTTGAAGTTGATGTATCTTGGCTGACACCACAAAGTGAATATCGTCCTACTGAATATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59798-60246 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWA01000027.1 Photorhabdus heterorhabditis strain SF41 scaffold_0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59798 28 100.0 33 ............................ AAATTCATTACCCGATCAGATAACGTTAATTGC 59859 28 100.0 32 ............................ GTGCTACTCGATAAGTCCCCCCGGTTTATCGG 59919 28 100.0 32 ............................ ATTCGCAACGATCTGGATGAACTGGCGGTAGT 59979 28 100.0 32 ............................ CAGATAACAGCGAATATATGAAATTAAAACAG 60039 28 100.0 32 ............................ GTATCATCCGATAACAAACTCAGCGTTGGACG 60099 28 100.0 32 ............................ CAGTCGGCGTTCCGCTTCCATATCCGCATAGA 60159 28 100.0 32 ............................ TGTTTTGATTGGTATTGGTGAAATTTTTGGTT 60219 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTAATGTCTAAGTTGCCCAAACTTAAGAGGTTGGGTGGGAAACATCACTAGGTTCCAAGTATATATGACTTATTCCTGACAAATATTTACAGGGTCCCGGAATCATCCGTCTCTGGATATCTTATATACCCAATAGATTTCAAGATGGATCGCGACGGCAAGGGAGCGAATCCCCGGGAGCATAGATAACTATGTGACCGGGGTGAGTGAGTGCAGCCAACAAAGAAGCAACTTGAAAGATAACAGGTATAAACTCCATTTTTCACATTATATTACAATATATTAAGGAAAATTTAGCTATTTCTGCGACAGCTAAAAGCTACCAAATATTGCTATAAGATATGGTGTTTCTACTGCACCCTAATTTTGACCCTTTTTTATCGCCAAATAATAACCTATTGATTTTTAATTAAAATAAAGTATCTCTTATAAAAAGGGTTTTTTCACTTTTTATGATTATACTCTTTAACAGTCAATGGATTAGAGTTAATATGCAACA # Right flank : GATGGTGAAACACGACGAATATTAGAGATGGAAATCCGTAAGACATTATGGATATGCATCATATTTTTGTGGCAATGGCAACATCTATTACTGAAGTTGGTAGGGATCATGATTATGATTGGAACATTGCTGAACTGGGTTCAACGCGCTCGTTGATACAACTTGTCGAATGTATTTAAAGCAATAGGCAAAAAGAGGCACAGATGCTTAGGTGGTACAAGTAGTTTAAAAACACAATAAAGGTTAGTTAATTGCGTAGTCGTGGAGCCAGTAACTGATTGCGGATGGATTCTGCTAGCTCGTCCAGAGAAGGTTGTTCTGGATGGTCATCTGATGTTTCGTAGGCTAATTGCGCTTCGGCTAAATAAGTATGTACGGGTTGGCCGTCGTCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAAGCAGCATTGGATGCAATGTCATCCTCTTGAGGTTGTTCCAGAGAATATTCCACATCAATGTCTACGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2385-3733 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWA01000033.1 Photorhabdus heterorhabditis strain SF41 scaffold_0033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2385 28 100.0 32 ............................ TGCATATAAATGGTATTCCAGAGCATGACGGC 2445 28 100.0 32 ............................ TCCGATAGTCGATGTGACTAACTATGTGTTAC 2505 28 100.0 32 ............................ CCTCTGACCGTGAAGCGGTTATGTAAAGCGTT 2565 28 100.0 32 ............................ GGCAGGAAAATATTTACTCTCAGGTTCAAGCT 2625 28 100.0 32 ............................ GCTCTTCGGGTTCTGCTGCCAGATTTCGGCAC 2685 28 100.0 32 ............................ TCGGCCATCATTCTATGAGAAAGATGCTCATC 2745 28 100.0 32 ............................ GTCTTCTACAAAGCTCATCCAAGAGTTCTTAC 2805 28 100.0 32 ............................ ACATTGTGCTCGCCAAATTCAAATTGTTTTCG 2865 28 100.0 32 ............................ CAGTCGCTGCAACGCTGGCAGGAAAAACACGC 2925 28 100.0 33 ............................ CTTTACTGAATAACGCCACCGCGCCAAAACTGG 2986 28 100.0 32 ............................ ATCAAGAGTAAATGCCGAATAGACGTCAATAG 3046 28 100.0 32 ............................ AATCTCGTCTTGTATCTTCTGACGAACTTCAA 3106 28 100.0 32 ............................ GAGGGTACGATGATCCCGGCAGGGACGATACT 3166 28 100.0 32 ............................ ATTAATTCTGAGAAATTACTTTCAGATAACCA 3226 28 100.0 32 ............................ AGTAGTTATTGATGTGATTTGTATACTCAGCT 3286 28 100.0 32 ............................ GAAATCCCCCTCGAACATATCAAACGCGAGAA 3346 28 100.0 32 ............................ TGCTTTATAGAAAAACAATCATCATTATTGAA 3406 28 100.0 32 ............................ TAAAGATTACGATATGTTCATAGCTGAGGGTG 3466 28 100.0 32 ............................ ATAAGGTTGAATAAAAACGCCTCCATATCTTG 3526 28 100.0 32 ............................ GATAGTCAATTTCAGCCCCGTCTGTCACCGTT 3586 28 100.0 32 ............................ ATGACTAGCGAATTCGAAAACGGACGCAGAAC 3646 28 100.0 32 ............................ CAGAAGTTGGATTTAAGGTATATGCATCATAC 3706 28 92.9 0 ....................T...T... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTTGGGATACTCTCTTGGTGAAAAATGGCAGGGAAAAGGGCTGATGTATGAAGCTTTACAGCCAGCTATTCGTTATATGCAACGTCAACAGGGGATACATCGGATTATGGCTAATTATATGCCAAATAATCATCGTAGTGGAAAATTGTTGGAACGATTAGGCTTTGAACGAGAAGGTTATGCCAGGAAATACCTGATGATCAATGGAGTCTGGCAGGATCATGTATTAACGGCATTGACGGATGAAAAATGGAGTGAAAAAAGTTGATGCTTAAGCTGTATTGTCACCAGATAAAGTGAAGCGGATTAGTAATGATGAATTAAATTACTGTTGAAAATCTGCCAGGTTCCCCGCACCTTATTTTTGACCCTTTTTTAAGAGGCGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACTGTCAGTAAGTTAAGGTTAATATGCAACA # Right flank : AAGTTAATGATTTATAGCGTAATGAGCTCTAGTGCATAAGCATGTGTTTATGTATACTCGCCGCGCTTATTAATAAAGTGGATGATTAGTCATGAATAATATTACCGCCTTGTCTTTGGCTGCTGTAATGTTTACTAGCGGTTGCGCTACGATTGTGGGGGATAAAACTCAGCATATTCAGGTTGATAGTAATCCATCAGGAGCCACATTCTCCATCAAAGATGAGTTAGGCAGGGTTGTTGCACAAGGGAAAACGCCTCAAGATGTGATTTTAGAGAAGTCCGACGGGAGTTATTTTGGTAAGAAAGGTTATCTGGTCTCTTTTACTAAAGAGAATTCTGAGTCTGTAACGTTACCAATTAAAGCGAGCGCTAATGGTTGGTATATTGGTGGTAATTTTATATTCGGTAGTTTAATTGGTTGGCTCTTATTTGATCCGTTTAATGGCGGGATGTATACGCTGCATCCAAAGGCAGTGATCGCTGAGCTACCTCAGACTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //