Array 1 69428-67472 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYA01000122.1 Akkermansia muciniphila isolate Mouse_2_MG.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 69427 32 84.8 35 .AGA..G-......................... TCCTCTCATGGCCACGTTTTCTAAAAAAGCCATCC 69360 33 100.0 34 ................................. TCTTAGAATTAAGAAAGAGGAACGATATCTACAA 69293 33 100.0 34 ................................. CTCTTATAATTCAAAAAGCCATCTCTCCTTTTAT 69226 33 100.0 34 ................................. TATATCTCACTAATGGAAAAGAAAACAAAATCAT 69159 33 100.0 33 ................................. CCGGACGGACACGCCGCAAAACCACCCGTCAAG 69093 33 100.0 34 ................................. CGTATCTCGATACGTGGGGCGGGTACGTCAAAGA 69026 33 100.0 36 ................................. ATGTCAGGTAACGTAATGCTTGTGTTTTTCTTGCTG 68957 33 100.0 34 ................................. AAGAAGAATATGAAGGGTGAAGCTCCTCCCGTGC 68890 33 100.0 35 ................................. CAGGTCTGGGACTGTAGCTCCATGCCGCCGGAAAA 68822 33 100.0 34 ................................. GTTATTGGTTGCGGGGATAAAGCTGGTTGTGGTC 68755 33 100.0 35 ................................. GGAGTTTCTTCCTATATCAGGGGGGCAGGTTTATT 68687 33 100.0 34 ................................. TGTCTGTCATGGGCGCAATCGCAATGCAGGGAAA 68620 33 100.0 35 ................................. GATGGAACCTCCGAAGCGGGGAGGCTCCGGCGTAT 68552 33 100.0 34 ................................. GGGACCGTAGAAGCCCGGCGCGTGTCTGATATAG 68485 33 100.0 34 ................................. TACTCCGGAGCTGGGAATGGACGCCGTAACCCTT 68418 33 100.0 34 ................................. TGCTCGGATTTATCAACAAGAACCGGGGTTTCCC 68351 33 100.0 34 ................................. TATCTGCTCTGATTATTTGCAGGCGTACAGCAAA 68284 33 100.0 34 ................................. TGGATGACGAGGCCGTCAATGGTGAGGTCGGCGG 68217 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 68150 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 68083 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 68016 33 100.0 34 ................................. GGTAAGTCCGGCGTCACCCGGCCGGAAGAAACAA 67949 33 100.0 34 ................................. GCTGTTATCCGTTTGATGTTGTCAACCGACAGCA 67882 33 100.0 33 ................................. TCAAAAATCCGCCCTGGAACGCGTCATTATTCC 67816 33 100.0 9 ................................. GAGACGCCG Deletion [67775] 67774 33 75.8 34 .C....A..AA..TT.CC............... AGCCTGTTCAGAAAAAGCCCCGAACAAGAACAAC T [67769] 67706 33 97.0 35 ...........C..................... TGACGGAGGGCATCCACATGGTCCACCTCCGCCGT 67638 33 100.0 34 ................................. CACACCCAGGCCGCGGGGGAAACGTCCACCTGAA 67571 33 97.0 34 ........................T........ TGGTCGCTGATCGTGTTGGACCTCATCATATTGG 67504 33 97.0 0 ...........C..................... | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 98.4 33 GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Left flank : AGATGTGTATA # Right flank : CTGAATGGTGATTGTTATTTGCGGTTTTCCGCCCGTCGCACTCCTTGCGGAGTGTATGAAGAGGACGACGATGCGGTAGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGGGTGGTGGTCAAGGGCGTTTTCCTGTAATGCTTGATAATTTTTTTACAAAGTATTGGTACATTCCGACTCTTTAAAAAATTCCATTTTTCAAAAAATTTTTCAGGATTGTTGGAGCTGGAAGGCTTGTCAGTTAATTTCTCTATTTATTTTTCAGAAAGAGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGGGCCAGGACGGGGTCCTGCGCCGCGCCTCCCGTTTCCCGCTGGCGGTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCTTCGTCCCGGAAAACGC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19261-19429 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYA01000136.1 Akkermansia muciniphila isolate Mouse_2_MG.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 19261 37 100.0 29 ..................................... CCTGCCAGACCGTATTATTCTTATCTACC 19327 37 100.0 29 ..................................... TAATCCGTCGAGATTATGCGGGCGAATGG 19393 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATG # Left flank : CTGACTCTATATATAGTCTTATTTCTGAAGGAAATAAAACAATGCAGGCAGAACGACGAAAAAGAGGAGGGGAGAAACGTCCTGCAATTAGTATTGTGCATTGTCGCATGGTTTTTATTAGTTTGGATGCTCATCTGCCATCCTGAATGGCTTGAGATTTGCGCTAAAACATTTTTCTTCGGATGCATCGCTTTTACGGCGGCCTTGATCATCATACTTTGCTTGCTAGGGTGGAAGTACAAGAACCGCGAAAAGCAAGAAGATTGACATGTTGAGCATGGGGGCTATTGGAAAAATTGCGTCTATGCTTTTCTCTATATTGTTTGATGCCTTTCGTAGTTATTCATTATTCTAATTTTTCCAATTACCTCTGGGAAACCCTGGGAATGAAAAATCCGTTGCACTGGATACATTCTGCCGTTTGCAGGTGTTTTTCTTGATGTGACAGAAATCAACAAGGCACAGTACAATAGCTTCAAACAGGACTGGTCGCCGCCGTT # Right flank : CGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGAAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCTATTCTTTCCTGAGTAACACACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATACTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATATGCCATGGTTCATACGGTCCGGATTGCCCGGCAAGAACTGCTTTACGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCATCTGTTTGTTCTGGTGCATAACAGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 118115-117694 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYA01000199.1 Akkermansia muciniphila isolate Mouse_2_MG.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 118114 31 100.0 34 ............................... CATGAAGTTTTGCATTAAGCCACCTTTGCGTAAC 118049 31 100.0 34 ............................... CCTTCGACACCGTACACCCTTACAAGACCCGCGG 117984 31 100.0 34 ............................... TAACAGAAATAATTGATAACGATGAATACTACAG 117919 31 100.0 35 ............................... GCTCCCTGGTGATTGACCGGGGGGAAAGAAAGCTG 117853 31 100.0 34 ............................... GAGTCCCGTACGCGATGCCAGTTTCTCTATTCTT 117788 31 100.0 33 ............................... CACATTAGCGCATGCCTATGATTACAGTTATCG 117724 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATAGAACC # Left flank : TTCTGGAACGTATTGCCGGGGATGGTTCCGCCAAAAAGGCGTCTGAATTGGGCAAGGAAATTCCGACCGCCTTGTAAAGGTGAGGAGAATTTTTCCCATTGAGCCTTAAAGCTGGAGCCGTCCGTAAGGGCGGCTCCTGTTTTTCATGGCGGAACATTCCTGTTTCCCGGGAGGTGGATGCCTGGTTTTGTAAGGTATGAGGAAGATGGTTCTGGACGCGGCGGAAAAGAACGGTTAACATCAACGAAACAAATTGAGTGCAAGCTGGCTGGGACGTGAAGAAACTGAGTTTTTCTGAAATGATACCGCTTCGGATGCTGCCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCAGCGCATGCTGTAAGTGCTTGGGAAATGTATCTTGAAAAAAATCTCCTTTGATCAGGCCTGTCTGCATCCGTTTTGTTCATCAGGTTGGCGCAAAATCTTTGTTGCATGTTTGATGCTCAAACCGTATTAGTCTGGCC # Right flank : CCGTGGTTTGAGAGTGCCGTTTACTATTTTTAAAAAGCAAGGCCTGAGTAATACAAAAGAAAGACAGAATGCCCCTTGTTTCTCAGTATTTGAATCCTGAGCGGGACAGGGTGATTTGTACAGAGAGGGCGGTGCGCAGGAGTAAAGCGCCCGTGCTGCGTACTGGAAACAGGAAGCAGGGGATATTCTTTCGGCTGGACAAATGGAGAAGCGGAAGACACTCTAAGCGTTCCATGGAGGACATACGCTATTACAACCGTTATACGGGCAGAGTGGAACGGGAGCAGGTACTGGGGGAGAAGTATATGCAATGGATTTACGGCACTGCCTCGGGGAAGGCGGCGCTGCATGTCCTGATTAAACGAGGCGTTTTTTCCCGTCTGCTGGGGTGGTTGAAGAACCGCCCTTCCAGCGCCCGTTCCATTCCCTCTTTTGTGAAGGAGTACGGCATTAATATGGAAGATTCTCTCAAGGGGATGGGAGAGTTCAGGCATTTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 436-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYA01000154.1 Akkermansia muciniphila isolate Mouse_2_MG.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 435 33 100.0 35 ................................. ACATTTGTACAAGTGAAATCATGACGCCGACTAAA 367 33 100.0 34 ................................. CTCCGTAAAACCGCAGCACACCTCATGCTTCTCC 300 33 100.0 34 ................................. CATGACGGAGGCCGCGGAATGCATAGCAGGAGCT 233 33 100.0 34 ................................. AATATTGACTTGTATCTCCAAGTTGAACAAGGAA 166 33 100.0 35 ................................. TCCTCTCATGGCCACGTTTTCTAAAAAAGCCATCC 98 33 100.0 34 ................................. TCTTAGAATTAAGAAAGAGGAACGATATCTACAA 31 31 93.9 0 ...............................-- | ========== ====== ====== ====== ================================= =================================== ================== 7 33 99.1 34 GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Left flank : CTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGTCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAACAATGTATAAGGTCGGCCGCAGTCGCACTCCGTAAGGA # Right flank : A # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9807-8924 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYA01000154.1 Akkermansia muciniphila isolate Mouse_2_MG.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 9806 31 100.0 34 ............................... AAGTTTGTCCGCACGGAGCGTCTGCCCAAGTCCG 9741 31 100.0 34 ............................... ATTTTTTTGGCGAGATCCGCCGACTTGTCTTCCG 9676 31 100.0 34 ............................... TGGTGTGCCCTGGAGAGGCCGCCGAATACCAGGA 9611 31 93.5 34 ..........A.G.................. CGGCAGCTGCACGACGACCGCGCCCGCCACGGCC GC [9601] 9544 31 100.0 34 ............................... CTCAATCAGGTCGCCAATCGCCCGTAGATAGTAA 9479 31 100.0 34 ............................... GGATCTCTGTCTTGTTGAAGGTCCATCCCGCGAA 9414 31 100.0 35 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGGG 9348 31 100.0 35 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGGG 9282 31 100.0 35 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGGG 9216 31 100.0 34 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGG 9151 31 100.0 35 ............................... ATTATTGAAGGAGGCTATCACTTGCTGCGATTTCG 9085 31 100.0 35 ............................... GTCGTCAATTACTTCGTAGCAATAATCATGCCAAT 9019 31 100.0 34 ............................... ACGTCGTCGGTCATTTCCGCCAGGGCGGAGGCGC 8954 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 14 31 98.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : CGGACGGGAGGCATGCCGGATTGAAGTGCCCTGGCGGCGCGGGGAATCGGAGAATTCCCGCTGGTCCTGCTGGTGCTGGCACAGTGCCGAGGCTTCCCCTGATTTATACGCCCGGATGTTCCGGATGGTGACGACAGGCAACCCCCGGCCTTATGGGGTGCCGCGCGAGCGCAGGGCGGAAATTATGCACTCCCTTTGCAACGCCAAAATAAAGCTGATGGCAGCGGCGGCAATAGCCCCGGTTCAAGGTACGGATCAACCTTCCTTCCGGTGAGTTTTTTATAGCAAATTCGGGGGTAAAAGTCACGCAAATTCACCCGTTTTCAGGCGTTTTTTTCACCTCTTTTCAGGCTTCCGGAAAGGGGCTTTTCCTGGCCGCAAGTGGCGAAATATCGCAACAACCTGTCCCGCATATCGCAACTATCTTGCGCCGTTACACATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTCCAGGA # Right flank : GTCGTAGACTGAACGACCTAATATCCTTGGAATAAGAAGAAGCTGTTGGCTATAAAGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGCAGATCATATTTCTTTACAATATTTCCGTCCTCGGAGACTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGTGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGAACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //