Array 1 619759-618632 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKZ01000012.1 Streptomyces sp. CB02923 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 619758 29 96.6 32 .C........................... CCCGTGTGGGCCGGTGAGGCTCGTCGGGCCCG 619697 29 100.0 32 ............................. CGGGTAGCCGACCTGGTCACCGTGCAGCGACG 619636 29 96.6 32 ............................T CGACGGTGCCGAGGTAGGTGGTGGTCAGTTCG 619575 29 100.0 32 ............................. GACCTCTGGGCCCCGTCACGCGTCGTCGCCAT 619514 29 100.0 32 ............................. CGGTCCAAGGCCGACCAGGACCCGGCGACCTG 619453 29 100.0 32 ............................. TGCGGCGGCCCGCGCGACGGCCTGTTGCCATT 619392 29 100.0 32 ............................. TGGCCGTGATCGTGGTCGCTCTCATGGCGAGC 619331 29 100.0 32 ............................. GGTCTCTCGCCACGTGATCGGCGCCTTGCAGT 619270 29 100.0 32 ............................. ACCTTGAACGCCGCGCAGGTGGAGATCGTTGG 619209 29 100.0 32 ............................. TCGCCCGCCGGGAAGCTCAGGGATCCGCTCGT 619148 29 96.6 32 .......................A..... GTGGGCATGGGCGCGGTCGCCCTGCTGATCGT 619087 29 96.6 32 .C........................... CGCGCCGCCGCCCGGGGCACGCTGTGGTCCGA 619026 29 96.6 32 .C........................... GCGTTCTTGGTGAAGCCCACCGTTACCGTGGT 618965 29 96.6 32 .C........................... CCCGTTTGCACGATCTGCACACGCAACCTTCG 618904 29 96.6 32 .C........................... TGTGCCGCCACTACCGGGTGCGCCACGACGGG 618843 29 96.6 32 .C........................... TTCACCCGCCACCGCTGGCCTCCGGACATGAC 618782 29 96.6 30 ...........................G. TGTCGAGTGGGAGACCCTCCTGCCGACCAC G [618758] 618722 27 86.2 32 ...-.....-.......A.....C..... GGCTTCTATTGCTCGATCCTGGCGGTGCCCGA 618663 29 86.2 0 ....GT......G...........G.... | GTA [618650] ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.9 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : CAGCGACGAGGTGCTGTGTTGACCGTCATCATCCTCGCCAACTGCCCCGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTCCTCGAAATCTCCCCCGGCGTCTTCCTCGGCTCCCCCAGCGCCCGCATCCGCGACCTACTGTGGGACGAAGTCCGCCAGTACTCCAACCAAGGCCGCCCCCTCCTCGTCCACCAGACCGACACCGAACAAGGCTTCACCTTCCGCACCCACCACCACGCCTGGCACCCCACCGACCACGAAGGACTCACCCTCCTTCACCGCCCAGCCCAACCGAAAGCAGGGCGCTCACCCCAGCCACCAAAACAAAACTGGAGCAAGGCCGCCCAACGCCGCAAATACGGCCGCCGATAACCACCCCAGCCCACACCCCGCACGAACGGAGCAGCCCGCCAATGCCTGAACATATGTCGGCTATGCCGGAATTCTTGGAAGTAAGTAAAACCTCCCGCCTCGCCTGACAAAGTCGCTGGTCACGGCCT # Right flank : GGCCATCAGGTCGCCGACGAGGGCATGCTGCAGTCCCCCGCCTGTGCGGAGCTGACCCGGATGTTGCGGAGGGCCGCCCTTCGGTGCACCGCCGCCTTCGGCTGGCTGATCGTCGCCGACGTGGTTGGAGGGGCCTGCCGCCACCTGCTCGCTGAGCACTCGGCCTTACCGGCGCCGACGCTGCCCGCCGACGTCGTACCGTCATCGTGAACGGCGGCTTCGGCGTCTCCCGGCACTCCCGCACCGAACGCAAGCACCGTCCCATCCCGGCCCCGGCCCCCGATCAACGGAGCTGCGCCCCCACCGCCCGATCCCGACCTTCGCCTCAGAGAATCCGCGCCCAAGCCCCTACGCAACCGTCAGGCCCTTCCCTGACCCTGGAGGGACATAGAGGCACATCGCATGGCCGGCCCGAAGGCATGACGGTCGCGACCGCGTTCTGACCGCGAAATGGGCCCGGTTCTGGGGCCGAGTGGAGATGGCAGCGAGACGACGACGCT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : GCGGTCCCCGCGCGTGCGGGGCTGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 634135-633683 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKZ01000012.1 Streptomyces sp. CB02923 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 634134 29 100.0 32 ............................. GGAGGGACCGCCAGGCCGGCCTTCTTGTGCCA 634073 29 100.0 32 ............................. CTGGATCCGCGCGTCCAGCAGGTCCCGTTCCG 634012 29 100.0 32 ............................. GCTACGGACCCAACGTGCCGATCCCGCTGCTT 633951 29 96.6 32 ............................T CGCCCGGCCAGGCCGGTGCGCCGTACGTACTC 633890 29 100.0 32 ............................. GCGGGCCCTTCGACGCGGGCGACGTCGGGTTC 633829 29 86.2 32 ....C.........G......T......A CGGACGGCCTGCTCGGCGTAGGTGTGCACGTC 633768 29 89.7 28 .....................C..CC... GGCGCTCTGCGGGCCGCCTACCGCCGCA 633711 29 72.4 0 ...C.......A..C..A.A....AA..G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGCCGGACAGACCTCCTCAGAACTACAGAACCGACTCTCCCGGCGGCTACGCACAGTAGCCCCTCAGCAGACTCGGGCCTCGACCATTCACGGCCCCATTCAGGCAGCACACGTCGCCCAACTTGGCTCCCGCACCTAACGGCTCTCGGCACGCGAGGTGGCGACAGCCTGCCGCGAGGTGATCTCGCTGGGCTTCGGCGACGACACCGGGTACGACGGCCACGGGGCAAAACCGGCTCCGGACCGGCCAATCACACAGCCCACATGCGGAGCGGGGCCGCACCACACCTCCGACTCGATCGCCCAAGCCTTCTGCGCCCTTCAACTCCCCCTCGCAAGAGACCGACGACATCGACGGCACAGGCCCGCCGCCTGCAGGTAGTAGCGTGATCAGGGAACTAGGCTTCCACCTCGAACACTCCTCCTAGGTCGAAATGTCGGAGTTCTCGAAAGTGAGTAAGAACCCGCGCTCCGCCAGATAAAACTGCTGGTCGCGGCCT # Right flank : CCTCCGACGCACGTGGAGCGGCTCTGAGGCGCATTCTCGGCGCGAGCAGAGGTGGACCGCTCAGGTCAGGAGACGGGCAGCTGTCTGCCGGAGTTGCTGTGCTTCGCTCACTCCCCCAAAGCGCCGCAGCCGTACGCGCATGTCGTGCAGCGCGGCCTGGACCTTTACTGAGCGGATGCCGTCGGCGCAGTCGAGGAACGTGTTCCAGGAGGCCAGCGCCCCGTCGAGGTTGCCGCGGCGTAGGCGTACGCCGGCGAGGTCGGCGTGGACGATGGCGCGGGTGCGGCGGCGGTCGAGGCCGTGGATGTCGAGGGCGAGGTGGAGGTGTTCTTCGGCGGCGGGCAGGTCGCCGAGGCGGGAGAGGATCATGCCGGATTCGTGGGCCCAGCGGCCGGGTGAGTAGTGGGCCGCCCAGGAGTCGCCGGGGGTGGCGGCCGGGCGGCCGATGGCTGTTTCGGAGGCGGCGAGGTGTTGGGTGGCCAGGTGTCGGTCGTCGTCAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100197-99503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKZ01000023.1 Streptomyces sp. CB02923 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 100196 30 100.0 31 .............................. CATGACCACTCTCGCTGAGCGCGCGGCGGCT 100135 30 100.0 31 .............................. AGAACGCCGACCTGCTGTACAAAGCGCTCGC 100074 30 100.0 31 .............................. TTGGTCAGGTCGGACAGCAGGCCACGGACGC 100013 30 100.0 31 .............................. GCCCGACCACTGGTGGATCGCCGGCACAGAC 99952 30 100.0 31 .............................. TCGCGGTACCCCAGCGCCCGCCGGGGGCCGG 99891 30 100.0 31 .............................. CCGCACCGGACGCGCGGGCCATGACGAACCG 99830 30 93.3 31 ..........................C..C GGGCGCAGCGCCCGGACGGCCGCTGGTACGC 99769 30 93.3 31 .....................C....C... CGCTGCTCGCCGAGGTCAGCGGAGACCCCGA 99708 30 93.3 32 ......................G......C AACGCCGACACCGAGCGTGGGCGGATCGAGCG GG [99680] 99644 30 96.7 31 ..........................C... ACCTCCGGCCCCTGCCGGACAGCCCGGAGCC 99583 30 86.7 19 ........A............A....C..A ACGCACGGCAGGTGAAGGA Deletion [99535] 99534 30 80.0 0 .C.T.A......T.............C..A | T,G [99517,99526] ========== ====== ====== ====== ============================== ================================ ================== 12 30 95.3 30 GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG # Left flank : CTTCGCGGCCGCCCTCACCGACCTCCGCCGGAGCCAGAACGATCGCTGGCACGTGGAACAGGACGCCCCGGACAGCCCTGGTTTCATCAGCGCCCGCGAAGAGTCCTACCAGCGGCGCGCGGACGCCACAGCGGCGTTGTGCCGGGTCCGTCTCATCTGCGCCGATCCAGACCTGAGCCGGTCGGCCCAAGACGCTCTCGACGCCGCGACCACGGTTCACCTGGCGCAGGACGAACAAGACCGCGCGAGGCGGGGAGAGAAGGCCCGCCTGGCTCTGGATGAATTCCTCTCGACCGCCTCATCGCATGTTCACTGAACAGGCCAAGGGGATGCCGTGAAGCGACGTGAACATGGTGAGCGTTGGCAGCGCCGGCTCGGACTCACAAGATCGGAGCAGCCCTTGGGTGGTCCAAGATGCTCTGGTTCCAATAGAATTGCCGGAATCCCGAGAAGTAAGGAAGAATCGCCGTCCCGCCTGGCGAATCCGCTGGTCGCGGCCT # Right flank : GGCCCTTGAGCGGGCCGCCGACCAGGTTGTCGTGGTCCCCGCGAGGCCGGGCGCCCACCCCGCGTAGGCGCCCGCCCCGCCCCTGCTTCAGAGTTCGAGCCGGAACGTGACCCGATCCAGCGCAGGTCCGTCATAGTCCGTGATCGGGGTGGACGGGGTGAAGCCGAGGGCTGTGTGGAAGGCGATGGAGCGGGTGTTTTGGGGGGAGGTGATGGCCTTGACCGTGGTGCGGCCGTGCGCGCGGGCCATGTCGAAGAATCGTTCGTACAGGAAGCGGCCCAGGCCGCTGCGCCGCCAGGCGGGGGCGACTCCGGTGAAGTGGATGTACGCCTCCTCCGGGAGGGACGGGGAGAGGAAGCCGATGACGAAGCCGGCCAGTTCGCCGTCGCGTTCGGCGATCAGGCTGGTGTCGTGGAAGTGGTTCACGAAGACCCGGGTCAGGTCGCGGGAGGCGGGCCGGCCCCACCAGTCGTCGACCACCGCGACGACCGTGTCGAAGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 383939-386288 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKZ01000001.1 Streptomyces sp. CB02923 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 383939 29 100.0 32 ............................. CCGGCTTTGCCCATGACCTCCATGAGGGTGTT 384000 29 100.0 32 ............................. CCGTCCGTTTCCGCGATTAGGACGAGACCGTC 384061 29 96.6 32 ............................T CAACACCGCCTACTCAGGCGACGAGTCCCTGA 384122 29 100.0 32 ............................. AGATGCCACGTCTCCCCCAGTGTGAAGCGCTC 384183 29 100.0 32 ............................. CCGACGCCCAGCCGCTCATGTAGCGGCCCGAC 384244 29 100.0 32 ............................. CAGGTGCAGGTGCCGTCGACGGGCTGGGGCGT 384305 29 100.0 33 ............................. GTATCCCTCCGCGCGGGTCGCCCCGACATCGGG 384367 29 100.0 32 ............................. GCCGGCGAGGTAGCCGCCGCCCTCGCCGAGCG 384428 29 100.0 32 ............................. ATCGCGTCCATGAACCTGGGCTCGGTACGGGT 384489 29 100.0 32 ............................. TTCGACGCCGCCGAGACCGGCGCGCGGGCCGA 384550 29 100.0 32 ............................. TCCGCTACCGCATCGGCCACGATCGCCGCCGT 384611 29 96.6 32 ........................A.... GCGGGGTTCTCCATCCCCGCACTGCCACACGT 384672 29 93.1 32 ....................C...A.... ACGGCCGCGGACCAGCGGCCGCCCGCGTCGGC 384733 29 93.1 32 .C....T...................... CCCCGGGCGGCCATCCCCACGCCGAACCGCAG 384794 29 100.0 32 ............................. CACACCCCGGGCAGTTGGCTGGTGGACCTCTC 384855 29 79.3 32 ...T...............A....AG.TA CCGCTGAGGAGCCCGGTCGATGCGCGGCCGAG 384916 29 86.2 34 .A......T.....T.T............ CCGACGGTGCCCTTGGCGAGGTCAGTTTCGACGC 384979 29 89.7 32 ........T...............AG... GACGCCGCTCCGGTGATCGCCCGTATCGACAC 385040 29 93.1 32 .G......................A.... AGCGGATCGGCCTGCGGGGCCGGCGGCGGGGT 385101 29 82.8 32 .............A.......T..AGT.. GAGATCGCCAAATGAGCACGACGTTCCACGAG 385162 29 79.3 31 .....C.......AT.........AGT.. GCCGAGCTGGAGGCCGTGGGCATCCCCTGAC 385222 29 82.8 32 .......T.......A.C...T......C CAAGCTGACCGACTCCTGGGTGAGGCACTCGT 385283 29 89.7 32 .A.......A..............A.... GCCCCTACGTTTGACCAGGATGTCGGGGTGCG 385344 29 96.6 32 ........................A.... CGGGCGGCCACCTGCTGCGCCGCGGCTTCGGG G [385357] 385406 29 96.6 32 ........................A.... ACGGTGCCGCCGCGCTCGTCACGGAACTGATC 385467 27 82.8 35 ............--..........A..AA CCGGGCGTCGAGTTGGGCAGCCTCCGGCGGGCGAG 385529 29 93.1 32 .............C..........A.... TCGACCGGCTCGGCCTGCGACAGGTCCGGCTC 385590 29 93.1 32 .............C..........A.... GTGGCCACCAGCGCCATGACGAGGGCGAGGGC 385651 29 93.1 32 ........................AG... CGCGCCGGATGCTCCACCGCGACCGCTGGCCG 385712 29 93.1 32 ........................A.T.. GCTTTCTGCTCGGCCGAGATCGGCACGGTGAC 385773 29 96.6 32 ........................A.... GAAGGCCACGTCTTCCTGCTGCGGACCGCGTC 385834 29 100.0 32 ............................. CCTAGGACCATGGGCGGTACGACCAACACCGG 385895 29 89.7 32 ...........T.A..........A.... GCATACGCCGAGCTGGGGCGCTCGGGCTTTGC 385956 29 96.6 32 ..............T.............. TCGGCGGCCCGCAGGTCATGGCGGAGCAGATC 386017 29 96.6 32 ........................A.... GTCATCGAGCACCTGCGGGCATTCAGTGACGA 386078 29 93.1 32 ........T...............A.... GCTCCTGCGGCGGCGTCCTGCCACTTCGCGAA 386139 29 82.8 32 .....G.......A.......G.TA.... AGGCCCATTTGCGTTCATCCAGCTAGAGCCTG 386200 29 86.2 31 .C............T.........A..T. GCCGACGAGGTGATGCGGTGACGACCCCAGC 386260 29 86.2 0 .................G...GC..T... | ========== ====== ====== ====== ============================= =================================== ================== 39 29 93.3 32 GTCCGACCCGCACGCGCAGGTATCGACCG # Left flank : CACCCCCCTGCTCACCTGGTGCCAAGAAGGCCATGCCATCCGCTACCGGCTCGACGCAGCCCCCCAACGCTCCCGGCCCTCCACCACAACCGACGCCAAAGGCCGCCGCCACCGCGGCAAGCTCTTCCCCCTGTACGGCGAGGAGGCCACCGCCTGGTGGCACCACAAAGCCACCGAAGCTGGCCTCACCCTCGACCCCGACACCCTCCTCGCCGCGAGCCAGCCCGCGATCTTCGGCCGCAAAAAACACCCGCACGAGCCCGGCCGGATGCGCTTCCACATGCCGGTATCGCGCTTCGAAGGCCACGCCACCATCACCGACCCCGACGCCCTCCGCACAGCCATCACCACCGGAATAGGCCGAGCCCGCGCCTACGGAGCAGGACTCCTGTCCATCGCCCCCTCCCGGTAACCCCGACGACCACGCCCCCGCACCAACCCCCGACACGAACCTTGATAACGAAACAGCAAAGCCACCCAAGCACCGCAGGTCGCGAAGG # Right flank : GCCCTCTTCGACGCCGACGTAGCGGCTCCTGACCGCACGCATAGGCGTCTGCTTATACCAATTGAAATATTCACCGTCGATACCCCTGCCGTTCGCCAGAACGGTTTGGCTTCACTTGGAGGTTTTATGCCTGACAATTTCAACCCTGACCAAGACGTGTGGGGAAAGTGGGACGGCCTCCTCTTCCCTTACCCCTTGGGCTGCCACTTCCTCGATACTGCCGCAATAGCAGGGGAACTTTGGGACGCCTATCTCACGGAGCAACAACGTGCCGCTGTCGCCGACGCATTCGGTGTACCGGTGGCGGATGCTCGCGGGATGGTCTGTTTCTGGGCCGGGTTGCACGACTTGGGCAAGTGCTGCCCCGCGTTTCAGGGACAGCCGTCGGGCCCCAATCCGGCATTCCTCGCAACACCGGATTTCGCTGCTCCTCCCGGTTGGATGTTTGAGGGGGCGGTGCGGCACGAGCGGGTGACGCATTTGGTGTTGCCTTCGCTTCT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCCGCACGCGCAGGTATCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGACCCGCACGCGCAGGTATCGACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8618-8831 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKZ01000004.1 Streptomyces sp. CB02923 scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8618 29 100.0 32 ............................. GCAGGACCGGGACCGCGGCGCCGCAGCGTCCC 8679 29 100.0 32 ............................. TGGCGGGCCAGAGTCACGCCGATGCGCAGGAC 8740 29 100.0 32 ............................. GGGTAGCACTCCTCGTCGACACCGGGGGCGAC 8801 29 82.8 0 ...........A.C.......CC.....G | A,C [8822,8827] ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 ATGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : TACGCGGAGTGGCTGTGGGAGGAGGACAAGGGCGGCCGTACGGCGCAGCAGCAGTTCGACGAGCTGTACGGGACCGACGAGGACGACGAGGACATCTGGGGCTTCCCGCCCGGCGACCCGGGCACGGCGGAGAACGTGACCGGCAACCCCGTCTACAAGCGCGGCGGCATGGTCCTCCAGCAGCTCCGGAAGGCCGTCGGCGACAAGGTCTTCTTCGCGATCCTCAAGGACTGGCCGGCCGAGCACCGCCACGGCAGCGCCGACTCCCAGCAGTTCATCGACTTCTGCCAGGACCGTACGGACGTCGACCTGACGGACCTCTTCGACGACTGGCTGTACGGGGACGGGAAGCCGGACTGGGAGTACTGAGGAAGCGGGCGCGCTGGAAGGGCCGGAGGATGCACTCGCCGCACAGATGCCCTGACTCTCCCGATACTCCGGTTTTCGCGGAAGCGAGTAAAAGTGCGGGTGCGGCAGGGTAAACGGGCAGGTGAGTTCCT # Right flank : GGCTGCCGACGCGGTCGCACGGTGACCCGGGAGAGGAGGAGCGCCCTAGCCGCGCTTCTTCTTCGCCTTGGTTGCCTTCTTGGTCGCCGGGTTGCCCGTGCGGGCCTTCCGGCGGCGCTCGTGGCGTTCGCGTTCCGCCTCGTACTCGGCGCGCCGTACCCGCTCCCCCGGTGCCTCGACGAGGCTGCGGCAGAAGTAGGCGAGCAGTGAGCCGATGAAGCCGATGAGCAGCAGGCTCTGCGCGGAACGGTCGGCCGGGCGTTCGGGGGCCGCGTCGTCGGTGCCGCGGGTCAGGCGGTCCCAGGTGCGGCGGAAGGCGACCGCGCTGCACACCGCGAAGCAGACCACGACCAGGACGTTCAGGAACGAGCCGACCTCGGCGATCTCCAGGCCCTGGAAGGCGAAGCGCAGCACCACCGCGCCGGCCGCGGCGAGCGCCAGGGAGCCCGCGGCGGCCCCGGCCCGGCGCAGGCCGTAGCCGCCGTCGTGGTGCACCCAGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 120150-120790 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKZ01000027.1 Streptomyces sp. CB02923 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120150 29 100.0 33 ............................. CTGGGCACTGCCGCGCAGCTCGCCGATCCCGAG 120212 29 100.0 32 ............................. GGCAATGCCAACGGCCCGATCCGCTACCGCAG 120273 29 100.0 32 ............................. CGCTCCTGATCAGCCCGAAAGGAAGTAGCCGT 120334 29 100.0 32 ............................. CGGCCGGCGTAGGTCTGGGTGGGGGTGTCGTC 120395 29 100.0 32 ............................. CTGCCCGATGGCCTGACCCATGGCGCCCATCG 120456 29 100.0 32 ............................. GCAACGGGATCCCTGTCGGCCATCTTCGTCAC 120517 29 100.0 32 ............................. CAGTTCGCCTCCGGTCAGTTCGGCGACGGAGG 120578 29 96.6 32 ............................T GCAGTGGGCATAGTTTCTCCTCGTGGTGCCGG 120639 29 96.6 33 .........................C... GACCTTCACAGGCAGCGGACACGGCTTCACCGA 120701 29 93.1 32 ...........A................T CTGTTCGCCCGGGGTGCGGCGCTGGACCTGTC 120762 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 GTGGTCCCCGCGGGTGCGGGGGTGTTCCC # Left flank : GCGCCGCAGCCGACCCGGGTGCCGGTGGAACACATCGCCGTCGTCGAGCAGTTGAGGACCTACTGGGGGGCTGCCGTTGCCGGGCGGGCCCGGACGTCGACGTGGTGAGTGCCGGCGACTTCGGCAAGACAACTCTGGCCGACGGATCTGCCCGGATCGCGATGCCCGCGTCCGCGACCTGCTCTGGGACGAAGCCCGCCGCCACCCCAAACCAAGGCCGCACCCTCCTCGCCCACCAAACCGACACCGAACTAGGCTTCACCTTCCGCACCCACAACCACGCCCGGCACCCCACCGACCACGAAGGACTCGCTCTCCCCAAAACAGAGCCGGAACAAGGCCGCACAACGCCGCAAGTTCAGCCGCCGATGACCACACCGCCCCACGCCTCGCACGAGCGGAGCAGCCCGTCGATGCTTGAACGTATGCCGGATATGCCGGAATCCCTGAAAGTAAGCAAAAACCACCACCCAGCCTGACAAAGCCGCTGGCCGCGGCCT # Right flank : CAGGGCGGCTCGGCGCCGGTACTGGTCGGCGATGCGGTCCCCGCGCGTGCGGGGAGCCGCGCTTGAACAACCCGCACCCCCGCTTCGGTCATCTGTCAGGCAACCGCACCGCTGCATACACAGCCCACGCCCCTCGCCCTCCAGAGCCTTGCGGCGTTGTCAGTGCCTCTGCTTATGCTGTGGTCGTCACGCTCAGTAATCCAATTAGTGGCTGACGGGGCGTCGGAAAGTCAGCATTCGGCATCAGCACCTACCGAGATCGCCGGAAACCGTCAGGCTCAACTCGCCCCCTCGCCCCCTCCGACCTGCAATATTTCAGCTCATTGCCGATTCCTTCGAGCAGCCGAGGAGACCCCGTGAAAATGCTCATCAACGTCCCCGAGACCGTCGTCGACGACGCGCTTCGTGGTATCGCTGTTGCCCATCCTGAGCTGGTCGTGGATGTCGGGAGTCGGGTGGTCGTGCGGCGGGATGCGCCGGTTGCCGGGAAGGTGGGGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGGGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //