Array 1 305342-304492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056077.1 Escherichia coli strain MS1170 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 305341 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 305281 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 305221 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 305160 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 305100 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 305040 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 304980 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 304919 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 304859 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 304799 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 304739 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 304678 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 304618 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 304519 27 85.7 0 ...G...A...............C-... | T [304500] ========== ====== ====== ====== ============================ ======================================================================= ================== 14 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 316895-314400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056077.1 Escherichia coli strain MS1170 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 316894 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 316834 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 316774 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 316714 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 316653 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 316593 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 316532 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 316472 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 316412 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 316352 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 316292 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 316232 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 316172 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 316112 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 316052 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 315992 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 315932 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 315872 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 315812 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 315752 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 315692 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 315632 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 315572 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 315512 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 315452 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 315392 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 315331 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 315271 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 315211 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 315151 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 315091 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 315031 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 314971 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 314911 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 314851 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 314791 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 314731 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 314669 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 314609 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 314549 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 314489 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 314429 28 85.7 0 ....................T...C.CT | C,A [314403,314406] ========== ====== ====== ====== ============================ ================================== ================== 42 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //