Array 1 61025-61712 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBC01000022.1 Selenomonas ruminantium strain HD4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61025 28 100.0 32 ............................ TGTTACCTCAGTCCATGATGACATGGCCCATT 61085 28 100.0 32 ............................ GCCATGGAAAGCGGCTGCCACACAGTAGCATC 61145 28 100.0 32 ............................ ATAAACCATAGCCTCGTTCGGGATATTGGCAC 61205 28 100.0 32 ............................ CGTTTGCTAACAAGCTGAGCGTGGTTGCAGAT 61265 28 100.0 32 ............................ GACAAACTGAATGAGGCCCGGACGGCAGTGGG 61325 28 100.0 32 ............................ CACCAAGACGGCGGCCACGCTGGTGGGCGGCA 61385 28 100.0 32 ............................ TGTTTGAGCCGATTGTTGGCTGTCTGCAATTC 61445 28 96.4 32 ..A......................... GAGAATGCCGAGAACTCAATACAAGCAGCCAA 61505 28 96.4 32 ..A......................... TCCAAGAGATAAGGCATGCAGCCTTCATCCCG 61565 28 96.4 32 ..A......................... AACACTCTGACGGTGGAACGTGCTATCAATGG 61625 28 96.4 32 ..A......................... ATCTAAATATGATGGTCCTGTGAAAATTTGAA 61685 28 96.4 0 ..A......................... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 GTGTTCCGCCGAATAGGCGGCTTAGAAA # Left flank : CAATTCAATAAGTTCCGTGAAGGTGCGCAGGATATAGAGCTATGTCTTAAAAAACAAGAAAACGGCACGTTCTGCTTTTGCGAACAGAGTGAAAGCACAGATGAATGGATAGAGCGGGAGGATTGGTATCATATCCAAAAACAAAAAGATGAGGAAAGTGAGCGCTTCTGGCTGCAGCGTGATTATCAGCAGGCATTGGCCGATTATCAGGGAGATTCTGCTAACAGCAAGGGCGTAATTCAGGCAGGAATTTTGCATTTGCCTGCGAACAGGGAAAAAACTGTGTGGGTGTATTCTGATCAGTTTGGCATGTATGATGAAAAGAAGGACTTTGCCCCTTAATACAGAATAACATCTATGTAAGCGATTTTACCCAAATTTTGCTGACTGTTGCAAACCCCTATAAAATAAGGGACTAGCGAGACGTGAAAAATTAGGGTAAAATAACTGGAAATCGCAAGAAGGCTTCTGGTTGTAGGGAAAGAGGGCAAAATCCCACA # Right flank : AGCGATAATCTAAGCCCTGCAGAAACATGCCCTGTATTCCGCCGAATAGGCGGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTCCGCCGAATAGGCGGCTTAGAAATCCAGCTGAGATGCAGGATCTATACCATGCCCGTATTCCGCCGAATAGGCGGCTTAGAAAGCCCGCCTCCTTTCTCATCATCCGCCAATAAAGTATTCCGCCGAATAGGCGGCTTAGAAAAACGAGATATTCCGTGCCATCAAGCGTTATGAGTATTCCGCCGAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCCGAATAGGCGGCTTAGAAA # Alternate repeat : GTATTCCGCCGAATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 62018-62645 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBC01000022.1 Selenomonas ruminantium strain HD4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62018 28 100.0 32 ............................ TCCAGCTGAGATGCAGGATCTATACCATGCCC 62078 28 100.0 32 ............................ GCCCGCCTCCTTTCTCATCATCCGCCAATAAA 62138 28 100.0 32 ............................ AACGAGATATTCCGTGCCATCAAGCGTTATGA 62198 28 100.0 32 ............................ TACTTCGGTCGTCGCCCCGGTAGCAACCACGG 62258 28 100.0 32 ............................ ACAGTCAAGCATGACCATGGCGTTCCCACTGT 62318 28 100.0 32 ............................ CTTCTGATAAGTGCCACCCGTCCTGGCAAGAT 62378 28 100.0 32 ............................ AGTCAGCGTGGAACGCAGTCACAAGCTTGTGG 62438 28 100.0 32 ............................ CCCTTTCGCATGATTCAAACGATTTTCAAACG 62498 28 100.0 32 ............................ TGCACCGAGACGAGCAGCCCCGGCACGCATGG 62558 28 100.0 32 ............................ TTTGAGCGTGCCGCTCTTGACTTTCTGATAGA 62618 28 78.6 0 ......................GGTCCT | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.1 32 GTATTCCGCCGAATAGGCGGCTTAGAAA # Left flank : TAGGCGGCTTAGAAATCCAAGAGATAAGGCATGCAGCCTTCATCCCGGTATTCCGCCGAATAGGCGGCTTAGAAAAACACTCTGACGGTGGAACGTGCTATCAATGGGTATTCCGCCGAATAGGCGGCTTAGAAAATCTAAATATGATGGTCCTGTGAAAATTTGAAGTATTCCGCCGAATAGGCGGCTTAGAAAGCGATAATCTAAGCCCTGCAGAAACATGCCCTGTATTCCGCCGAATAGGCGGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATGTCAAGATTTAGTACAACATAAAATGAGAAATTTTAATTATTTTCAACTTACCAATCGTGATTCTCTAGCAACGCTCGCATTGTAAAGTTTTTCAAAGTCATCTGGCGAAAGATATCCACAATGGCTGTGAATCCGCTTTGTGTTATAAAATGCTTCAATATACTCAAAAATTAGGCTGTGAGCATGATTAAAATCCCGGATTCTAAAGCGGTTCAGCCATTCACGCTTTATCAATGCGTGAAATGACTCGATACAGGCATTATCCCATGGATAAGCTTTCTTGGAATAGCTCCGCTGCATTCGTGCGGTGGCCTTCTTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCGCCGAATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 76951-75901 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBC01000015.1 Selenomonas ruminantium strain HD4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76950 28 100.0 33 ............................ CGGTTCCAGCGCCCCACCTATAGCCCCCACAGT 76889 28 100.0 32 ............................ CAGAGGGGGCGTATAAAGCCAAGACCAAGGCC 76829 28 100.0 32 ............................ TTGACGCCGATCATATCCTCATTCTTGCCGCC 76769 28 100.0 32 ............................ TCTATCTCAACGTGCAGGATCTGGTAGATGTG 76709 28 100.0 32 ............................ TTTCTCTGGAGGCCAGGCGGCAGATAGTCAAG 76649 28 100.0 32 ............................ TCACGGATCGCATTGGCGTAGCCCTGGAAAAT 76589 28 100.0 32 ............................ TGAAGCTGTATCTGGAAGCCGAAAAAGCGGTT 76529 28 100.0 32 ............................ AAATATTCGTTTGCCGTGACGACCGGCGCGAA 76469 28 100.0 32 ............................ ACTACTTCACAAGTGATGGCAGGATGATGCAG 76409 28 100.0 32 ............................ GCCAGGGACGATGCACGAGGTGTGGAGACCTA 76349 28 100.0 32 ............................ TTCAAAGGGGAGGAAACGGGGCGGCTGATTCC 76289 28 100.0 32 ............................ TGTGCCACACTGCCGCCACAGCTTACCGGATC 76229 28 100.0 32 ............................ TGTTGGAATGTCCATTCTTCCCCCGGTTTGAA 76169 28 100.0 33 ............................ TTTCAGTAAGCGACGATTATTGTTCTGGATACC 76108 28 100.0 32 ............................ TTTAGCATGGATAGAAAATGCTGTTTGGGACA 76048 28 100.0 32 ............................ ACTGTCGCGGATGCTGCAGTCTGAATCCAGTC 75988 28 100.0 32 ............................ CACTGCACAATCAACCCACTCGCATACTTGAC 75928 28 78.6 0 .......T...C.....A..T.....TG | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTGTTCCGCCGTATAGGCGGCTTAGAAA # Left flank : GAAGCTCAATTGGAAGCATTAGCGATAAAGAAATGGCTACAGAGGTATGAAGATTACATTCATATGACCAGCATCCGTCCTGTGCCGAAGCGAGTGCATGGCTATGCAATTTATCGTCGTTATCATCCGGAAGCAAGTTCTATGCAGAAGGCCAGACGCTACGCCAAGCGGCATAATGTATCTTATGATGAAGCCTTGAAATTATTTCCGCAAGAATGCAGGGATAAAAAAGTTCCCTTTGTGCAGATGCATAGTGAAACGAATCAGCAAAAATACCGCCTTTGTATAGAACGCATTGTACAGGATTCGGATCAGGACGTTGGTTTTGGCAGTTATGGTCTGGATAACCAGTCAACTGTGCCGGAATTTTGACCAAAATTTCATCATGGTACGGGAACCCGCATAAAATAAGCGTGTGGGAGAAGGGGTAAAATTAGGGTGAAATGCTATAAATCTGCGGGAAGAGCTTATTTTACGGGAATCTTTAGCGATTGAATGAA # Right flank : CACAAGACGTTGACTTTTGTTGCTGTATAGGGTAAATTCATAAGTATGATTAAGAAAAGCAAACACCAAGGAAGTGAAATGGAGAAGTTTTGCCGGGATATCTGGCGTACCATTGAAGATACGATTTTTGAACAACATGGCTGTCTGCTGCCGGCTGGCGATATAACAGTAGATGTGATTCTGCACTGGAACAAGGAGGAAGTGTTGGGATCGTTGAAACGCCGGGGCAAGATTGCCAGTTGGGTACAGGACAGAGAATTTGAAGATGGCAACATGCGCAGATACAAAATTATCGTAGATAGCGAGAAGATATGAAGGTGTTTTTTAGATGGTTGTTGCACACAAAAAATTCGTATTTGTTTGATTAAGCTATGAAATATGGTATTTTGTGAAGGCAGAACTGCTTCAGCATATGCCCTTTCATAATACATAAAGCCGCTCCGCTGATGGGGTGTCAGCAGGAGCGGCTTTTGGTGGCGGGGAGGCTATTTTTCAGTCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCCGTATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 80900-81040 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBC01000015.1 Selenomonas ruminantium strain HD4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ======================================= ================== 80900 21 100.0 39 ..................... GGATGATGTTCTGCTCCGTGCATTTGCGGGATTTTCTAA 80960 21 100.0 39 ..................... TATGGATTCACCGTCACACAGCAGATACTGGCTTTCTAA 81020 21 95.2 0 ..................T.. | ========== ====== ====== ====== ===================== ======================================= ================== 3 21 98.4 40 GCCGCCTATTCGGCGGAACAC # Left flank : TCTTCACGCACCTGCTCGTAATCCGCCTGCATGATTTGAAAATCTTCCCGCAGAGCATCATCAGCAGACTGCAAATGTTCATAGAAGGTCTTCCCATCTTCCAGATGCAGTTGCAGCAAACTGGCAGTTGCCAAATAATTAGCCGCCACAAAAATATCCGGTGAACAAGCCACCGAACCTGTCGATACATATACATCATCCGGTTTGCCATTTATCTTTGCCTGCCAATTGACTGTCACATCCGGATTGATAAAACGGCCTATATGCGTAGCAAACTGACACTTACTGGCATTCTTAGCCGTATCAGCCAGCCACTGTCCGGGCGGTACACCTTTCTTTTCAGATTCTGCTTGCACATAATCTGTCAACACACTCATCAACATCACCTCACTTGCTTATATTGTTCAATATCATCTGCCATTTATCCTTGTTTTATATTATATTCTTCTAAATCATTGATAAATAATTTAGAAAAGAACAATACCGGTGTATTTTTAACT # Right flank : TTAACCTTAATAGTGTAGTGGTCAAGCATTTTTGTAACACTTGTGTCTTAATAATTGCTGATTCCTGTCCTGGCTTCGAACGGAGTCTTGTAACCATTATATGAATGTGGCCGCACATGGTTGTACCAGACATAAGCGAACTCTTCAACAGATGCATAAAGATCGTCCTCTGCCAGATAGTCATGCAGGTAAATCCATTCATTCTTTAGCGTATTGAAGTAGCGCTCCATCGGAGCATTATCATATGGATAGCCAGCCTTGCTCATACTTTGGGTAATACCTGCCGATTCACAGAATTCGGTAAATTCCTTTGAAGTGAACTGAG # Questionable array : NO Score: 4.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:-0.5, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCCTATTCGGCGGAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //