Array 1 399232-400846 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBW01000001.1 Salmonella enterica strain BCW_2530 NODE_1_length_525158_cov_0.354785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 399232 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 399293 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 399354 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 399415 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 399476 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 399537 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 399598 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 399659 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 399720 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 399781 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 399842 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 399903 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 399964 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 400025 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 400086 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 400147 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 400208 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 400269 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 400331 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 400392 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 400453 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 400514 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 400575 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 400636 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 400697 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 400758 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 400819 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 416979-418455 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBW01000001.1 Salmonella enterica strain BCW_2530 NODE_1_length_525158_cov_0.354785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 416979 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 417040 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 417102 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 417163 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 417224 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 417285 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 417346 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 417407 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 417468 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 417529 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 417590 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 417651 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 417712 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 417774 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 417877 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 417938 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 417999 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 418060 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 418121 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 418182 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 418243 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 418304 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 418365 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 418426 29 96.6 0 A............................ | A [418452] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //