Array 1 2935-2338 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGO01000003.1 Lactobacillus iners strain UMB1051 .21837_8_56.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 2934 29 96.6 32 ............................C TCTAGCGTCAGTTATTAAAATGATACTGGACA 2873 29 96.6 32 ............................C GATCAATTTTTGGAAAGCGGGGAGTATATAGG 2812 29 96.6 32 ............................C GATCAATTTTTGGAAAGCGGGGAGTATATAGG 2751 29 100.0 32 ............................. ACTTGCGTCGGTATGTAGCCCGTTCCAGTTAT 2690 29 100.0 32 ............................. GTTGCGAAGTCAGTATTAGATGCTTTAAATCC 2629 29 100.0 32 ............................. GACCAACTAAAAGATTTAGCAGGCATGGTAAA 2568 29 100.0 33 ............................. CAACGCTTACTTCAAAGTAATAAAGTCACTTTA 2506 29 82.8 109 ....................T.A...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT C [2481] 2367 29 69.0 0 ...C..T...T......T.T...A..AAA | A [2343] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 9 29 93.5 42 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACGTTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAGGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTATAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : GTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAACTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATAAGTGCTTTTTTGTGATTTGAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAATAA # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.86, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //