Array 1 10860-11863 **** Predicted by CRISPRDetect 2.4 *** >NZ_DACULU010000011.1 Citrobacter rodentium strain DSM 16636 SAMEA1486318-rid8516233.denovo.011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10860 29 96.6 32 ...........................G. GACTCTAACGCACTCAATCCACTTAATCCCAG 10921 29 96.6 32 ...........................G. AAACCACTGTAACCGCCTTCTAAGCGGTTTGC 10982 29 100.0 32 ............................. TCATTCCGGCGCACCAACTGGAATTGCTGGAA 11043 29 100.0 32 ............................. TAATAAACAAAAATCAACGCATCCTGGTGGCA 11104 29 100.0 32 ............................. CAGCTGGCAAGAACAAAATCGACTGGAGCGAC 11165 29 100.0 32 ............................. TTTCGGTGCCGGAATGACGTGTGAGCGTATTT 11226 29 100.0 32 ............................. ATCTGTTTATAGCTGGCTATAAAATTTATAAA 11287 29 100.0 32 ............................. TGGAAACGAACACCGCAGGGGTACGTGATTAC 11348 29 100.0 32 ............................. ACTACGGTTGATTTATAAGAGCTACCATCCGG 11409 29 100.0 32 ............................. TACGCGACATGTATTTTTTGCCGTGTTTCATG 11470 29 100.0 32 ............................. TTCATGGGGGGTCACGACCCAGCCGCCCAGCT 11531 29 100.0 32 ............................. TACCCCATTCAATACGGGCGATGCTGAATAGT 11592 29 96.6 32 ............G................ TTAATAGCTGAAACAGGTAAACTCAACCGCGA 11653 29 96.6 32 ............G................ GCGTAAACCCAGGGCTCGGCTTTTTTGTGAGT 11714 29 96.6 32 ............T................ CCATTATCGAACGCCGCGCTGAACTCGCTGAT 11775 29 96.6 32 .............T............... ACGCAACCATCATTGTTGCTGAGCACCACAAT 11836 28 79.3 0 .......T....AG...-....A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACACTGCCGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCGACCATCGCTGACCTGGCTGTTGGTACTGCTGCGGGCCAGATCAAAACCGGTTCTATGAGCCGTTCTGACCGCGTTGCTAAATACAACCAGCTGATTCGTATCGAAGAAGCGCTGGGTGAAAAAGCGCCGTACAACGGTCGTAAAGAGATCAAAGGTCAGGCGTAATCCTGTACTTTCGTTCTGATATAAAAACCCGCTTCGGCGGGTTTTTTGCTTTATATCATCCAGTGATTTTGACCCCGGTCGTTCTGTCTCGATCGTGAATTGAAATTTTCAATGGTGCGATAATCATCACACTGTTTTGGTAGATTTGAAGAAAGAATAGCTACCATCTTCTTTATCTTATTAAAATCAACAGATTAGTTGCTCTTTAAAAATGACTATTTGTAAGGATTAAGTTGGTAGAATGTTGTATTGATAGAAATTGCTTTATAAACAGTTGGTTGTATTTAGT # Right flank : GTAGTTTTGCCTGGCTATCTGCGATCTGCGATAATGCGCCCTCATAACCCCAGACAGAGACGATTATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGTGAAGGTTATTTCACCGGCGTCCCCGCCATTTTTATCCGTTTACAGGGATGCCCGGTTGGCTGTGCCTGGTGCGATACCAAACACACCTGGGATAAGCTTGAGGATCGGGAAGTCTCCCTGTTCAGCATCCTGGCGAAAACCAAAGAGAGTGATAAGTGGGGAGCGGCGAGCAGCGAAGATCTGCTGGCGGTAATCAATCGTCAGGGATATACCGCGCGTCATGTGGTGATTACCGGCGGCGAACCCTGCATCCACGATTTAATGCCGCTTACTGCGTTGCTGGAAAAAAACGGCTTCAGCTGCCAGATCGAAACCAGCGGTACCCATGAGGTGCGCTGTACGCCGAATACCTGGGTGACGGTATCTCCAAAAGTGAATATGCGTGGCGGCTAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31935-32389 **** Predicted by CRISPRDetect 2.4 *** >NZ_DACULU010000011.1 Citrobacter rodentium strain DSM 16636 SAMEA1486318-rid8516233.denovo.011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31935 29 100.0 32 ............................. GAGTATGTTTAAACGTTTACTGGCGCGCCTGT 31996 29 100.0 32 ............................. TCATATGTTGCCGCGTTTCCAGACGTCATGTT 32057 29 100.0 32 ............................. TGTCGGATAATCCGCACTTTTTGGCGAATGAC 32118 29 82.8 32 GT.........AT...........A.... TATCGTTCCTTCGCGGATGTCGTCACGCAACA 32179 28 86.2 32 ...........A....-.......A.T.. GAAGGTGATGAAATTAATCAGCGCAAACTGGA 32239 29 89.7 32 ...........AG...........A.... ATATAGATAGCCATCAACAACACCGCTTGGAC 32300 29 96.6 32 ........................A.... GGGCAGACGTTTGCCCGCTGGATGTAGCTATT 32361 29 89.7 0 .............C..........A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 AAGTTCCCCGCGCGAGCGGGGATAGACCG # Left flank : GTGCTATTAGCCGGTGAAATCGAGCCGCCGCAGCCCGCTCCGGATATGTTGCCCCCAGCGATACCAGAGCCGAAGCCGCTGGGGGATAACGGACATCGGGGACGTAGCGGATGAGCATGATGGTGGTTGTTACGGAAAATGTTCCTCCGCGTTTACGAGGGCGTCTTGCTATCTGGATGCTGGAAATTCGCGCTGGCGTTTATGTTGCAGATGTTTCGAAACGCATCCGGGAAATGATATGGCAGCAAGTCATTCAACTCGGTGGTGAGGGAAATGTTGTAATGGCATGGGCGACCAATACGGAGTCAGGTTTTGAATTTCAGACATGGGGTGAGAATCGTCGTATTCCCGTGGATTTGGATGGACTTCGTTTGGTCTCATTTCTTCCTGTTTAAAATCAAATAGTTGACTGATCTTTAAAAATGTGGATTTGTTGATTTTAAGTTGGTAGATTGTTGCCTTTGAAGAAAGTCTTTTAAAATCAGTCGGATATTTTTAGT # Right flank : GGGCTAATAAGGGTGCCCGGCACATGACACAATTGTTTCTATATTGTACCCATTTTTACTATCATTTCTTATGCTTCAGTTATACTGGTATTAACCAGAGTCCACAGAAAACTGGAGAAGGGTAAAGCCAGATTTGCTCGTTGATGTAAGCTCTCTTTTTGGATTTCAGAGATATAATAATATTAGCAATAAAACTTCCGAGGAAAAACAATACGCCTGACATGTCGTAAGCCAGACCACCGTAACCTGCATTCCGGCTCTTAATGTAAAGCAATATCATGGCTGTGACGGGATAAAGCATCAGCAGCAACGTCAATAATATCTGTTTTTTTAAGCGCATTTCCCTTGCAGACATTACGCAAAATATAATAAACAGAAACAGCCTGCCTGAATACCTGTATCTACCCATAAAAAATGAAAAGTCCGAAAGCATAGACATGAGTTGTTTAATCGATAGCGTTGTTTTACCCTTCATAACGTGATTGCCGGAGGCAATCACG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTCCCCGCGCGAGCGGGGATAGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //