Array 1 89221-91829 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFI01000001.1 Wohlfahrtiimonas chitiniclastica strain F6514 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89221 28 100.0 33 ............................ AGGCGGAATCAAGGCGCCAAGCAATAAATAAAT 89282 28 100.0 32 ............................ AAACTAGCGCTGCTAATTTATCAATACACGGA 89342 28 100.0 32 ............................ TGATTGAATCGAAAGCATCATAAAAAGAGCTG 89402 28 100.0 32 ............................ GCAATTTTCCCCTCGCTCCATCTATGTATAAT 89462 28 100.0 32 ............................ TAACAAGTAATCAAGGCTCGCTCCCGCACTTC 89522 28 100.0 32 ............................ AAAAGAAAGCAGCAACAGCAGCCAACTGTTTA 89582 28 100.0 32 ............................ ACCGCCATTTGATGCGCATCGTTCTGGGCGCT 89642 28 100.0 32 ............................ GCGAGAAAAAAAGGCGCGGGGGTCGTAGACTC 89702 28 100.0 32 ............................ CACCTCGGTCATGAGTGATATTGTTGCATTGA 89762 28 100.0 32 ............................ ATGATAGATGACCTGATAGTCGCCACGACCTT 89822 28 100.0 32 ............................ GCGTATCTTGAAGGCGTGATTGGTGTGATCAT 89882 28 100.0 32 ............................ TAAGCCCGATTGACACTTGCATTAAATACTCA 89942 28 100.0 32 ............................ AGAAGAATCGCGCGGTTTCTTTGCCTGACATA 90002 28 100.0 32 ............................ ACTCAGCGATTCAGGAAAAAACACACCATCAC 90062 28 100.0 32 ............................ TAGTCGTTCACTTTTTGCAGCTGCAACAAAAG 90122 28 100.0 32 ............................ CGACCCAAAAGCCGGTCGCGCTATACGAATGG 90182 28 100.0 32 ............................ CTTAAAATAAGGCGGATCAACAATCGCTAGAT 90242 28 100.0 32 ............................ AAGATCGTCATTGAGATCCGCAAGCGATTCAA 90302 28 100.0 32 ............................ CGTCGCAGATGCCACTGGGGGTTATGTAATTA 90362 28 100.0 32 ............................ AATCACGTTAGCAGCTGCTCCCAACGAGGGGT 90422 28 100.0 32 ............................ TTAAAGAATGGCGCCATTGCTACTGCGCTGTC 90482 28 100.0 32 ............................ TTTTTAAAACAGAACTCTAATTGAGCATCAGG 90542 28 100.0 32 ............................ ATTCTGACGCATTATCCACAGCTTTTTGTGCG 90602 28 100.0 32 ............................ ATATCCAAGGTGGTGGATTTTTTAAATATAAA 90662 28 100.0 32 ............................ CTACGATATGGTTATTAAATTGATTGCAATTA 90722 28 100.0 32 ............................ AATGAATATGAAAGACCGAGATTATATATGGC 90782 28 100.0 32 ............................ CCTACCAATTTTTAAGTGATTCAACTGTACTT 90842 28 100.0 32 ............................ TTTAAACTCCTTGTAATCCCACGTGTTTGGCT 90902 28 100.0 32 ............................ GTCAAAGCCAAATGGCTTATCGCTTGTTAGAA 90962 28 100.0 32 ............................ TGCCGCGTATGCAGCAAAATATGTCTACCCTC 91022 28 100.0 32 ............................ TTGTTGAGAATGAAAATAATGATCCGAATTTG 91082 28 100.0 32 ............................ CAATAACTTCTTGATTGGATTGTTGATGATGT 91142 28 100.0 32 ............................ AATTGAAGAGATTGAGAAAGCGATAGATACAT 91202 28 100.0 32 ............................ ATTTTATCCACTTGTTCTAAGAAGTAGATAAT 91262 28 100.0 32 ............................ CAAAAGATAATCCATACTGGCATTTGCACTTC 91322 28 96.4 32 .............T.............. AATATCAAACGCCGTTTTGCCGTCCTTCATAG 91382 28 96.4 32 .............T.............. GTTGAACTTACCACCCATACCGGCGATAACGC 91442 28 96.4 32 .............T.............. CTCTAAATCCACTACCATATTTTTATCAATGC 91502 28 96.4 32 .............T.............. TCTGCATGATCGTAAAGATTGCTATTCCCTGC 91562 28 96.4 32 .............T.............. AATCGGCATTAAACGACTTCCAGCCTCTCGAG 91622 28 96.4 32 .............T.............. GCCATTCAGCAACTCTTTTACCTGCTCTAGCA 91682 28 96.4 32 .............T.............. ACTAAGCGCAGTAAAATCAGGTGAAAAAGCGC 91742 28 96.4 32 .............T.............. ACCATTGCCTGATAACTGCCAGGTGCGCGCAG 91802 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGATTACAAGCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACAGCCATGTTCTACTATGGCAAACGTACTTATAAAGGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATAAACTGCCGAAATCATGATGTTTCCAATGGCATTGTTATATTTTTAAA # Right flank : AGACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAACTAATTCGTTAAGTTACTCACCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGGCTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCGCGGATGCCCACACGGTATTTACCGAGAGAAGATGCATAACTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCTACATTGCCATAACCATGGGCGACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCAGAATGGCGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 272546-274375 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFI01000001.1 Wohlfahrtiimonas chitiniclastica strain F6514 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 272546 28 82.1 32 A..AG..C.....T.............. ACAGCCAGGGTGGTGCAAGCAATGTATATGAC 272606 28 96.4 32 .............T.............. CATTAACAAATGTTAGATATAGTTTTTATTCA 272666 28 96.4 32 .............T.............. TTGAAGTCAGGGATGTCTTGCCCGCAGTACTT 272726 28 96.4 32 .............T.............. ACTAGACTTATTCTTTGCATTGCTAGCTCTAG 272786 28 96.4 32 .............T.............. AACTCCGAATCCATATGACGTTGAATCGCCAT 272846 28 96.4 32 .............T.............. AAAGCAACAGTTGCAACAGTAGGCAACTACCA 272906 28 96.4 32 .............T.............. ATGCCAGTAGGTTTGCGCTTGAATTTGATTGT 272966 28 96.4 32 .............T.............. TATTTATAAATCAAAAGCTTGCTTACATTTAA 273026 28 100.0 32 ............................ AATTGCTTTTTTTTCTTCTGTTGTCTGATTGG 273086 28 100.0 32 ............................ AACCCACCTTCGATTTTCTTGCGCTCGATCAC 273146 28 100.0 32 ............................ TCGGCACCAACATTTGACATGATACAGTTTTT 273206 28 100.0 32 ............................ TAACTGCGTGATCGAGCGTCACAATCCCTCGA 273266 28 100.0 32 ............................ AACTCGCATAAACAAAGAAACAGACAGAAAGA 273326 28 100.0 32 ............................ AAAAGATGTTAGTGCGCTATCAGTCATGGCTG 273386 28 100.0 32 ............................ TTTGGCTCTGTTTCTCGGTAGCGTGCAAATAT 273446 28 100.0 32 ............................ TTCGCCTTCAATGTAATCAACTGATTGTAACC 273506 28 100.0 32 ............................ AACAGGCTAAACAAGAATTAAATAGGGATTTT 273566 28 100.0 33 ............................ CTCAATCTTCTTGCGCTCGATCACAGCCATTTT 273627 28 100.0 32 ............................ TTCAAATTTTGAGTACAATTCATTGAGGTAAA 273687 28 100.0 32 ............................ TTTCTTGAAGTCGATGCCGAAATGCTTTTTCA 273747 28 100.0 32 ............................ ACGCCGTGCACGAGCTGCTGTAATCGATTCAG 273807 28 100.0 32 ............................ CTGCATTGGGTGTGCCAGGTGAATTCGCATCT 273867 28 96.4 32 .............T.............. ACTATCAAGATGGAGTATAACCGCAGATGAAG 273927 28 100.0 33 ............................ ATTGAATTCAGCAGTGGGCAACCAGTGATTTTT 273988 28 100.0 32 ............................ CCCCCGTATTACTATGTGGGGGTTGGGGAGGT 274048 28 100.0 32 ............................ TGACTAGCATAGCCAATAATTCCATCAATCGA 274108 28 100.0 32 ............................ ACTAATAAGTCCAGATGAAACAAGCTCTATTT 274168 28 100.0 32 ............................ CCTGCAATTTTTCTCCTCGACGTCGACAAATT 274228 28 100.0 32 ............................ ATCAAAGAATGATACGAATGCATTCCCCAACC 274288 28 100.0 32 ............................ TGCATCGATTAAATCCATCAATGCATTTGACA 274348 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATATTGTTGCTTGGCATTTTTTTCTATAACGGATTGGCTCCAAATTTTATGGAATTCGTTATAGATATGCTCAAATGAATCATTGTTATTTGTGTTTTTAGGATTTATCTTCTCAATAACAACTAATTTTCTGAGTTCATTATGTTTTGTACGTGCTTCAGCTAAAGAGATGAGTGGATATTGTCCAATAATGAATGTATCTTCTTTACCTGTATCTGGGTTAACGTATCTATATTCAAAAATTTTTGTGCCTGATGGAGTGATTTTTAAGCATAGTCCATAGCCATCATATAGGCGATATAACTTGTTTTTAGGTTTTGCATTTGCAATTTGTGTATTGGTTAATGGTTTTGAAATTCTAGCCATTTTTATACCCTTTTGAATACCCTCTAAAATTAGTGATTTATACACATTGATAGAAATGTAAGGAAACAATGTTATATTAAGAATAACGGTATATCAATTGGTGAAAGTCGTTAGGAAACGAGCGGAAACGGGT # Right flank : AAGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAGTAGAAAATTTTCTGAGAATTTGAGAAAAAATTGCAGAAAAAATGATAAATGTTATAGTTTGCACGATTAGATGAAATACAAGCACAAAATATAATGTGCCAACAATCATCATAAGTATAGAAAAACAACATAATATATTGATATTAAGGAGAATATTATGCACATGCATTTGAGTAATGAAGATCTTGATGCTTAATTACGGAAATTACAGCATCACAAGAGTGGATAAAAATGGCGACACATACCATTGGTCAGCAATATGATAAAGCTGCGTTAAATGACATTACTAAAAGTGTAAAAATGATCATTGGTCACTTTTTAAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATTACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //