Array 1 28435-27027 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJY01000009.1 Moraxella catarrhalis strain 3/22/2001 NODE_9_length_52974_cov_16.409333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28434 28 100.0 32 ............................ AATCAGGTAGAGCGGTTGTCCATGTTGGTGTT 28374 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 28314 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 28254 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 28194 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 28134 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 28074 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 28014 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 27954 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 27894 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 27834 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 27774 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 27714 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 27654 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 27594 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 27534 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 27474 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 27414 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 27354 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 27294 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 27234 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 27174 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 27114 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 27054 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //