Array 1 171675-172484 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKC01000001.1 Listeria monocytogenes strain FSL L7-0222 NODE_1_length_574433_cov_23.368040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 171675 29 100.0 36 ............................. CTTTAACCAAAAACAGACTAAAGGACTGGGAAGAAC 171740 29 100.0 36 ............................. TTTGTATTTGCGTTGAAAATAAAGTTCAAACAATCG 171805 29 100.0 36 ............................. AAAATTTGCACCACTGACGGATGCAGGTACGTATTT 171870 29 100.0 36 ............................. AATGTTTTCCGAAGCGTGTGAGTGCCTAAAGCTGGC 171935 29 100.0 36 ............................. ATTTTTGTAGATAATAGAGAGTCGGTAACGGAACTA 172000 29 100.0 36 ............................. TCAACTCTTCAATTAATAGCTCTAGCTCTAAAATGC 172065 29 100.0 36 ............................. AGCTTTATTCACAGTTATTGAACGTTTGTTGAAATT 172130 29 100.0 36 ............................. TTTAATTAGCTAACACCATAACAAAAACCCACCCCA 172195 29 100.0 35 ............................. CAGGTTACTGAGAATGGCTTTACAAGGCGGTTGGT 172259 29 96.6 37 ..............A.............. TCTGCTAGCGCTTTTTTCAGGTCTGTGTTAGTTTTCT 172325 29 100.0 36 ............................. ATACCTTTTGCAACTTTAAGCAACCGTGAATGGAGT 172390 29 96.6 37 ..............A.............. GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT 172456 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 98.2 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATTACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATAGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAACTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 189314-191680 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKC01000001.1 Listeria monocytogenes strain FSL L7-0222 NODE_1_length_574433_cov_23.368040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 189314 29 100.0 37 ............................. TCAACTGCTTAAAGAACCTCTTTGCGAAAGATGTTTA 189380 29 100.0 36 ............................. ACGGATTGTACAAAGTGTTTGGTGACAATAATGCGC 189445 29 100.0 39 ............................. GATAAATCAATGGGCATAGAAATTAACGGCAAACTTCCA 189513 29 96.6 34 A............................ GATACCTCTCTTGACATGCAATGGCATGCTTCAC 189576 29 100.0 36 ............................. TTTCTTAACGAAGCCTACCTAGTTAAATTTAAAAAC 189641 29 100.0 37 ............................. AAAACTGGCAAAACGTTTCCTCTGGCAATGTTTCAAA 189707 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 189773 29 100.0 35 ............................. AAGTAAAGCCCTTGATGCAACCTATCAGTTTGATC 189837 29 100.0 37 ............................. GAGGGTATTAGACAAGTTGTCACTAAAATAGAAGAAA 189903 29 100.0 36 ............................. AGAGGTTATGGGTGGTGGTTAGATAACATTAAAGAT 189968 29 100.0 36 ............................. TGAATTGAGCTTTTGTTTTCGCTACGTCCTGTCCGC 190033 29 100.0 36 ............................. GAAGATTCGGTTATTATCGTGAACTATGAGCGTGCT 190098 29 100.0 35 ............................. ACAATTATCCCAATTACAGGTAACATTGCAGTGAC 190162 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 190226 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 190293 29 100.0 35 ............................. GAAGGTAAGAATGTTCTGTTGGACTTGCCGCGCGG 190357 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 190423 29 100.0 34 ............................. ATTTTCACTACTAGGATAGACGTTGATTCAATTG 190486 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 190551 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 190616 29 100.0 35 ............................. CGAGTTACTGGCAAAGGTCAAATATACCTATTAAA 190680 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 190744 29 100.0 36 ............................. TACGTATTTCAAGTGACCAAAAAAGAGTGCTTGGAC 190809 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 190875 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 190938 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGC 191001 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 191067 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 191132 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 191196 29 100.0 36 ............................. TACGTATTTCAAGTGACCAAAAAAGAGTGCTTGGAC 191261 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 191327 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 191390 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGC 191453 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 191519 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 191584 29 96.6 38 ..........T.................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 191651 29 93.1 0 .......................A....C | C [191674] ========== ====== ====== ====== ============================= ======================================= ================== 37 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //