Array 1 1987595-1986775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064955.1 Corynebacterium qintianiae strain MC1420 chromosome MC1420, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1987594 28 100.0 33 ............................ TAGACGGGCACGGAGTCGCGTCCAACAGCGACA 1987533 28 100.0 33 ............................ CACTGTTGGCCCGGTGTTGCGTCAGCATGGTGT 1987472 28 100.0 33 ............................ GCCGTCGAATTCGTCGACATGAAGGTCGCGGAA 1987411 28 100.0 33 ............................ GCAGGTTAACCCCATGCAAGTCAGCGTCAAACA 1987350 28 100.0 33 ............................ GGTATTTCAGCCAAGCGGTGTCGGTGGCGATAC 1987289 28 100.0 33 ............................ CCAGGGCGAGCAGGATCATGCCTGCCTGCGGAA 1987228 28 100.0 33 ............................ CCACTCGTGGAAAAAGTTCTCGACTACCCCCGA 1987167 28 100.0 32 ............................ CCCCAGTGCGGTTCCTCCAGGCGCTCCGGGTT 1987107 28 100.0 33 ............................ GGTTCGCCTCCGGGTCCCAAATATCGTCATACC 1987046 28 100.0 33 ............................ CGAGGTAGGTGCCCCCGCCCCGAGCATGTAGGT 1986985 28 100.0 33 ............................ CTCGGACGGTTTACCAGTCACCGACTCCCACGA 1986924 28 96.4 33 ..........A................. CGCGGCGGAGACCTCGGCATCGGGGCGAATGCG 1986863 28 100.0 33 ............................ CAGCGAACCCAGCCAACGAAAAACCGAGGTCAC 1986802 28 89.3 0 .......T............C......T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : ACAGCCCTTGCACCTCGCCGACGAAGTGCTGGCTGGTCGGATCCCCGAGGACGAGCAGCACGTTCAGGTCGGGGATCGTCACACCCGGATCGGCAGACGCCAACGTTGCGATGCCGTTCTCGAGGGCCTTCTCGACGCGGGTCCACGCATCTGCCGCGACAAGGAACTCCAGACCTTCGCGGACCTGCTCGATCGCGGAGTCTGGACGGAAGCCGAAGTTTTGCTGGTGCACGGTGGCCATGTCCACGCCGCCGGGGATGAAGTGGTACATCCCCGCCATGGGAGCCCACATTTCACGGATGAGGTCGTCGCGAGCCTTCGTGTCCGCCGTCAGGACTCGGCTCATGCCCGAGGCACTGTCAATCATTGAAATGGTCATGACAAGCGACTGTAGACATTGCCGTTACGACAAGGTCAACCTTTCCTCGACTAATGTCCCCGGTCAGTACAGCTAGCGGGGATGAGCCCATGTTGTTCATGTTCGTGACCTGGCTGGTATC # Right flank : CTGGACAACCGAGCGCGTTCGTGACCTCTGAAAGTGCTCCCCTCACTATCGGTGAATTGTCTGAGGAATACGAAAATAGAGACGCGCTGGGAGTAGTCGTCCGAGGAGAGGGAAATCCCCGGGTCAAACCTCAAGGAACAAGCTGACCAAAGGCCCACCGAAAGGAACCCCTACTTCGCCGGATCCACCGGCGGGTACTTCTTCTTCGCGGCGTCGGACAAACCCGTGGGGTTGCCGTTTTCGTCGTAGATGTAGAAGCCTTGGCCGGATTCCTTGCCAATATGCCCCTTGTCAATGAACTCTTCCTTTAGGCGCCGGCTGAACTCGATCGCGAGCGGGTCGCCCGTTTCAGCCCGGTTTTTCGTGATCTGGTAGGCCACGCCCAAACCGGTGTTGTCCTGTGCGAGGAACGGGGCGAGTTGCTGTGTTCCGGCAAGCATGGAGGCCACCTCGTCGAGGGTTTCAATGTCGGCCACACCGAGTACCCACATGTCGCGGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1993883-1990436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064955.1 Corynebacterium qintianiae strain MC1420 chromosome MC1420, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1993882 28 100.0 33 ............................ CAGCGTTGCGGAAAGTTTCCGAACGTTGATAGG 1993821 28 100.0 33 ............................ GGTCAGGCGAGCTGCTGGCCAGGCCATCCAAAC 1993760 28 100.0 33 ............................ GTCGAAGCGGGCCCGGGCGGAACAGATTCTCGC 1993699 28 100.0 33 ............................ CACTGAGGCGCTCACGGCCGCGCACCATCGTGA 1993638 28 100.0 33 ............................ CTACTGGGCCGACCTCATGCCCGGCGGGAAGTC 1993577 28 100.0 33 ............................ GAAATTCGCGTGCGAGGTCGGTGTGTAGTCCGG 1993516 28 100.0 33 ............................ CACGTCAAGCAGGGTCATTCGTCGTCGTCCACC 1993455 28 100.0 33 ............................ CGACGGTGGTGTACAGGGTGTTACGCAACCGCA 1993394 28 100.0 33 ............................ GAACATCGTCGGAAACTTTGCGGTTGATTCGAC 1993333 28 100.0 34 ............................ CAGGTGTTGCCACTAAACCGGTAACCATGTTCAG 1993271 28 100.0 33 ............................ TCTCACTCGGCGCATGCGAGCTCGCGGGCGTGC 1993210 28 100.0 33 ............................ CCCCGGCGCGACCACACCACAGAAGGAGAACAC 1993149 28 100.0 33 ............................ GCGAACGGGACGTCGGCGCTGAATCTCGACCCT 1993088 28 100.0 33 ............................ CGACCTGGGCGCGGTGCTTGCGATGAGCCGCCC 1993027 28 100.0 33 ............................ GTCGGCTCGAACGAAATCAACCAAATTCTGAAA 1992966 28 100.0 33 ............................ CCTCATCGCCACCCGCGAGTACCGGAAGCTCGC 1992905 28 100.0 33 ............................ CGCCCGCATCGCCGACGAGCTGCCGCAGGACGT 1992844 28 100.0 33 ............................ GTCCCGCGGCACCGACCTCTACATCCGCATCGT 1992783 28 100.0 33 ............................ CCGGCGTCACCATTACCCCACCTCCTTCACCGT 1992722 28 100.0 33 ............................ CCGGTGTCCAGCATCGAATGGGCGGATCCCCCG 1992661 28 100.0 33 ............................ GTCACGCGGCAGGTGTCGCAGGTGGTGATGACG 1992600 28 100.0 33 ............................ CGTTGGTTGTCATAAATCCTCCTTCACGAGGGC 1992539 28 100.0 33 ............................ CTGTGGTGGCTGCCGTTCCCCAACCAGCGAGCG 1992478 28 100.0 33 ............................ TGGATCGCCGACAACTTCGAGATGGAGTGATGT 1992417 28 100.0 33 ............................ CGCCCCGTAATGGCGCTTCTAAACGACTTGCCT 1992356 28 100.0 33 ............................ CCAACCGGCGATGTAGTCCGTGTCGCCCTGCAA 1992295 28 100.0 33 ............................ GGATGTAGAAATCACCGGCACAACCATTGACGC 1992234 28 100.0 33 ............................ GATCGACAACCTGGTCATCGACGGCAATCGTCG 1992173 28 100.0 33 ............................ TGGATCGGCGCGTTCGGAGCTGTTGTCAAACTT 1992112 28 100.0 33 ............................ CGCTTAATCGGGGAATATGGTCAGATCCATGAC 1992051 28 100.0 33 ............................ CCGACCAGTCCGCCACCGAATGATCGGAGATAA 1991990 28 100.0 33 ............................ CCGTGACGCGCCTAACCTCGGGCAATATCGATG 1991929 28 100.0 33 ............................ CGCTATCCGAATCATCCTCGAAGGAGACCAACG 1991868 28 100.0 33 ............................ CTACGAGCTGCTGCCGCGGCTGGCTGCCGCGGA 1991807 28 100.0 33 ............................ CCGCCGCCGCGACACGTCGTCCCACTTCACATC 1991746 28 100.0 33 ............................ CCACGGCCACACAGGGCGCGGCGCCGCCGCCTG 1991685 28 100.0 33 ............................ GTCCGCGTCGGTGTAGCCGGTGCCCACCAGGTC 1991624 28 100.0 33 ............................ CGTCCACGAACTCGACGGTAACGTGTAGTCGCC 1991563 28 100.0 34 ............................ CTGCACACCCTTCAACGAGGCGGCGATGCCCTTG 1991501 28 100.0 33 ............................ CCTCCAAACCCCTCCACAACACGAAGGGGTTCA 1991440 28 96.4 33 ....C....................... CGGCTTGATCATCTACAACGGCGGGCACTACGC 1991379 28 100.0 33 ............................ CCAGTGGGCCCGCATCCCCATCGACTTCCTCTA 1991318 28 100.0 33 ............................ CGGTTCCCAGCGGCGCATCTGCGTAGTCCTTTG 1991257 28 100.0 33 ............................ CGGCTTAAACTCCATCCCATCCTCAAGCACAGG 1991196 28 100.0 33 ............................ GTCCTATCCAATCGGTGCCGTTCGTGGTGGTGC 1991135 28 96.4 33 ..................A......... TTTAGGGGGCTTGATAAGACTTCAATCGCGCTA 1991074 28 100.0 33 ............................ CAACTGGAGCGCGGAGCGGGTTCGCGACTTGTG 1991013 28 100.0 33 ............................ TTCCACTATCCCAATGCGTGGGTCGAGTGGCAC 1990952 28 100.0 33 ............................ CAACACCTTCCAGCAGGGCCCACTCCGACGGGA 1990891 28 100.0 33 ............................ GGACAGTCTCACAATGACTGACATCGAAGCACT 1990830 28 100.0 34 ............................ GGAACTCGCGGCGTGCGGCACCGGTGTACCCGTT 1990768 28 100.0 33 ............................ CAAAACGCACCCCAAAAAGTCGTAGGACTTCGG 1990707 28 96.4 33 .........................A.. CAGTCAGGCCGAGCTCTTTAATGGCAGCTTGAG 1990646 28 100.0 33 ............................ CGGAACCGACCCGTGGCCCGAAGCGCAGCTGGA 1990585 28 100.0 34 ............................ GTCGCCGCCGACGAACCACTGCCCGTCCAGCGAG 1990523 28 100.0 33 ............................ GCGGAGCGCCGTAACGGTGTCGAGTTGACAGCA 1990462 27 82.1 0 .................T.TAC...-.. | ========== ====== ====== ====== ============================ ================================== ================== 57 28 99.5 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : CGTATCAGACGCCGACCTCATCACTGACGTCGAGCTTATGCTGTGGAGCGAGCTGGAAACAATCGCTGCCGGGGTGAATTGGTCTGAAGAATCATGATGGTTCTCGTCATCACTGCATGCCCGGCCGGACTCCGAGGGGACTTGACCAAATGGCTTGCCGAGATCTCCCCGGGGGTCTTTGTGGGGCGGCCGTCGGCACGCGTGCGCGATTTGCTGTGGGAGCGTACGGAGCTGCTTGTCAAAGACGGGAGGGCGTTGCTTGTCTATTCCTCCGATAACGAGCAGGGGATGGAGTTTAGGACGCACCGACACGATTGGGTTCCAGAGGACTTTGATGGTTTTACGTTGATGGTCCGACAGAAGCCACAGAGCGAGAACGCTAGACGCACCGGTTGGAGCAACGCTAGGCGGCAGCGGAGGACTTATAAGGGGCGGTAGCGTTGCTTTAAAGTCGGGTCTAGAATGCTTTGCAGGCTCTCGTCCTTCCTGTTCAGGAAGGG # Right flank : GGGGACATTGATCAACCGCGTAAAGGGTGGCTGGTTCGCGCAGGCCGTGTGGGGTCGGTGATGGTTGTAGTGGTGCAGCCATGACTCGAGAGCGTCGCGTCGTTCTGCCTCTGAGCGGTAGCAGCGGGCGTAAGCCCACCCGTCTGCCATCGTGCGGTGGAAGCGTTCGACTTTCCCGTTCGTCTGCGGGCGATATGGGCGCGTGTATCTCGGCCGGATCGACAGCGTCTCGCAGGCATCACGCCACAGATGCGACCGGTAGGCACTGCCGTTGTCGGACAGTACTCGCTCGATTGTGACCCCACGCTCGGCGAACCAGTCGATGGCTCGTTGCAGGACTCCAACGGCAGTGAGAGCAGTCTCGTCGTCGCGAATCTCGGTGTACGCGACGCGGGAGTGGTCGTCGATAACGGTGTGGACGTAGGCGTAGCCCAGCTTGGGCCCGCCGTGCTGATTACGTGGCTTGTCTGGCGTGGCGACACGGTTGCGGTCGCCTTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //