Array 1 92979-92217 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAA01000307.1 Escherichia coli P0302293.10 gecP030229310.contig.309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92978 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 92917 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 92856 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 92795 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 92734 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 92673 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 92612 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 92551 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 92490 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 92428 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 92367 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 92306 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 92245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1669-176 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAA01000309.1 Escherichia coli P0302293.10 gecP030229310.contig.311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1668 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1607 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1546 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1485 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1424 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1363 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1302 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1241 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1180 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1119 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1058 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 997 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 936 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 875 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 814 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 753 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 692 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 631 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 570 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 509 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 448 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 387 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 326 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 265 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 204 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //