Array 1 1194-507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBE01000045.1 Campylobacter fetus subsp. testudinum strain D6783 contig00046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1193 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 1127 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 1061 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 995 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 929 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 864 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 798 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 731 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 665 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 599 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 536 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.1 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAATTTAGTATCGATATAATCGCACCTATACAC # Right flank : CATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1436-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBE01000033.1 Campylobacter fetus subsp. testudinum strain D6783 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1435 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 1370 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 1305 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 1238 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 1172 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 1108 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 1043 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 977 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 912 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 846 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 780 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 714 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 648 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 581 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 515 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 449 30 100.0 36 .............................. CGTTAAAACTTCAAAGACTTTCAACGAAATTTCCGT 383 30 96.7 34 ..............C............... TTAAAGTAGGTGCGGAATGCACGTACGCTTCTTT 319 30 93.3 35 A.............C............... TAGCCATTTCATTCTCGTTTATAGAAGGCTTAACG 254 30 100.0 36 .............................. TATCAGCAGAAACTAGAGAGCTGTTAGTTCTTTATA 188 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAGAGA 122 30 100.0 36 .............................. ACTATCCCACGGACAAATTAGCCGCAATCTATGCTT 56 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.1 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CATCAACAAATTTAATAAATCGAGTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //