Array 1 23610-24172 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAED01000055.1 Campylobacter coli strain MON334 1010900055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23610 36 97.2 30 T................................... GCAATATCCACAATATCTAAGGATTGCATA 23676 36 100.0 30 .................................... TTTTTAACCATTCATCTAATGCTAAATTTA 23742 36 100.0 30 .................................... AGTAAAAATGCAAAACCTTTTAGAATGTGG 23808 36 100.0 30 .................................... TAAAACCGATATTATAAAAACAGGTCAGTT 23874 36 100.0 30 .................................... AGATTTAATCTAGGTAGCTCAAATTCCCTT 23940 36 100.0 30 .................................... AGAGCGAGAGGTAAACATGATGTAGAATTG 24006 36 100.0 30 .................................... TAAAAAGCTTAGTGAGATTATTTTCATTGC 24072 36 100.0 29 .................................... TATTATGGACGAGTTTAAAAGTAGATTTG 24137 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : GAAGATTATTTTGCTAGGGTTGCTATAAACTGCGTAGCATTGTTTATTTTTATTTATGCTGCGGTAAACATTTCGATGACTATAGGATTTGCGCCTGTTGTTGGTATCCCGCTGCCTTTTTTTAGCTATGGAGGAAGTTCTTTTACGATTTTTATGATTTTCTTTGGAATTTTGCAGCATTTGATTACTTTTAGATATTTTTGGATAGATAGTAAAAATAAAATAAAATAATTTTAAGCAAAAATAAGATATAATTTTATCTTTAAAAATTAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCATTACTTTAAATATCTAATCTTAAATATGCATTAAACTATTCAAACTTTAAATAATATTTAAATCATTTGCTGTCACCATAAGACAAAATAGAAATTAATATTTTTTAAGTAAAATCTTTTATATATAGTGCTTTAGTTGATGATGAT # Right flank : AATTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3-170 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAED01000056.1 Campylobacter coli strain MON334 1010900056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 .................................... CAAGTATTTATCCAATAATTTGGTCTGAGT 69 36 100.0 30 .................................... AGGTATAATTGATACTTTATTTCCATTTAT 135 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATG # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTACATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCGTATTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGTAACTCCACCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCGGTTATGGTTAATACTCTTATATTGCCACAAGGAGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //