Array 1 37446-35044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKOX010000009.1 Ralstonia pseudosolanacearum strain LMG 9673 isolate LMG 9673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37445 29 100.0 32 ............................. ATACCTAAATGTGATCTATCCGTCGTCGCGCA 37384 29 100.0 32 ............................. TGTACGGCAACGCTTGGGTGTACGACAGCGGG 37323 29 100.0 32 ............................. GCAACCTGTCGGCGACCGCCCTCGCCGCGCTA 37262 29 100.0 32 ............................. TCCCCGCAGCTTGACCGCATGAGTGAAGAGGG 37201 29 100.0 32 ............................. CCATCGCCAGAGCGGCAGCCGTAGCCGTAGCC 37140 29 100.0 32 ............................. GCAATGGTCCTGCGCGCCGGGATCGAGTTGCC 37079 29 100.0 32 ............................. CCGTTGGCGCCGTAGGCGATCGAGATGTTGGC 37018 29 100.0 32 ............................. AAGGCGAGCCCGAGCTGGCGGACGACGACTTC 36957 29 100.0 32 ............................. GCTGTAGCGTTCTCGCCGTCCATGCTCGCCAT 36896 29 100.0 32 ............................. GCTGACATCGATCCCTGGACCCTGCTGTCGCC 36835 29 100.0 32 ............................. TGCAGTCCACATATGCGATGGCTCAGGGGCAA 36774 29 100.0 32 ............................. GCGCTAGTTACCGAGCACGTGGGTAGCCGTGT 36713 29 100.0 32 ............................. ACATCATCACTGAGCAGCCGCGTTGATACGTT 36652 29 100.0 32 ............................. CTCGCACAAGATGCGGCCATCGACGCGAAGGC 36591 29 100.0 32 ............................. TCCGACCTCGGATGGACGTTTATCGAGGACTA 36530 29 100.0 32 ............................. GCCACCACGTCGATGGTGCGCTTGACCTCCGC 36469 29 100.0 32 ............................. CAAAAGCTGGCGTCGGACATTAACGTTTCGGT 36408 29 100.0 32 ............................. TCGGTTAAACGCCGAATATTCACATAGATCAT 36347 29 100.0 26 ............................. CCGGAGCCGGAGCCGAAGCCGGAGCC 36292 29 100.0 32 ............................. CCAACTGCAGTGTCTATATTCCATACGAAATC 36231 29 100.0 32 ............................. CGCATGGCTGAGGAAGAGGCAGCAGGCATCGC 36170 29 100.0 32 ............................. TGCTGGCGATGGTCGCGGCAGGCGCCAGCGCC 36109 29 100.0 32 ............................. GCCACGCTTCGTACGTTGGAGGAAATTTTGAC 36048 29 100.0 32 ............................. TGCTGTTCCCTGACAAACAGGTCGTCACTGCC 35987 29 100.0 32 ............................. AAATGGAGGCCAAAATCGGAACACCCTGCGCC 35926 29 100.0 32 ............................. CGCGATGTTCGTCTGTCGCTGCAATGCTTGAC 35865 29 100.0 32 ............................. TTCCCTACACCACGGGCCTTAATTACGCCAGC 35804 29 100.0 32 ............................. TCCGGCGCCACCTCGTAGGCCGGCTTGAACCC 35743 29 100.0 32 ............................. ATTTGGCGAACGCACGCCATCGGGCGCTTTGT 35682 29 100.0 32 ............................. GGGAGCGCTGCGCAGGCTGTTGAACAACTGCA 35621 29 100.0 32 ............................. GCTCCGCCTCTGGGGGCCTCGGGCGCGGGCGC 35560 29 100.0 32 ............................. GAATCGTGCATGAGCTCGCTCTTCGACAACGC 35499 29 100.0 32 ............................. CCGATCACGTGCAGGTCGAAACCCGCGTCCTG 35438 29 96.6 32 ............A................ CCTGGCACGCGCGGCGCTTGGCCGGCGCGCTC 35377 29 96.6 32 ............A................ GCGGCGCGGCGTTGCGTCACACTGTGGCGTTT 35316 29 96.6 32 ............A................ AAATGGATCGCCGCATCGACAGCCGCATCCAG 35255 29 96.6 32 ............A................ GGAATTTTGGTGCGAGGGAGGGGACTCGAACC 35194 29 96.6 32 ............A................ TTGGCGCCTACCCGCGCCATGACCTACCGACT 35133 29 96.6 32 ............A................ ATCGAGGCGTGTTTTGTTGCTTTCGTGCGCAC 35072 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.5 32 GTGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : CCGCATCATCCCCGCCATCGAGGAGGTGCTGGCTGCGGGTGGCATCTCGCCTCCGGAGGCACCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACAGAAGATGTTCCCCCGCGCTTGCGTGGGCGACTCGCCATCTGGCTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGTAACGTCGTCATGGCCTGGGCCAGCCCGCATGAATCGGGCTATGAATTCCAGACACTGGGGGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACTATCGGTACTTTTTAGGCAGTGGAATTTTCGGTTCCTAATCAAGGGGTTGGGTTAAGT # Right flank : AATTGATAACGACCAACGGCTGCGCTGACAAGCGTAGTTCTCTTGGGGAAATTATTCCAGTCTGCTAGAATATTTCCGACTATCAGGAATGTTTCCTGCAAGGCTGAATGGTTAGGAGGTTCTATGTTGACTGTGGGCAAAGCGGTTTCCGCGGCCGAAGTGGCGTTCATGGCCAACCTGAGCGACAAGGAAATCAACCGCATGGTCGATGAAGACGTGCTGCCATCTGCACTCGTGGTGCGCGACCATGGCCGGCGTTTCGCGCCGCTGGCAGCCCCTTTTGCGACGTTCTATTTCAGGTCGAGCGAGGAACTGACGCGCGCCGCGCGGGTCCGCGTCATCGCGACGCTGACCGAACGGCTGCTCGAGCGTCCGGACCGGGACGCGTTTCTGTTTCTCAGTACCCGTGTGACAAAGGCGAAGTTTGACTGGTCGGTATCGCATTCGGACGTCACGGTGTTTCTGGCCACATACGTGCGGGAAGCAGCGGAGCGCGCGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47889-46884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKOX010000009.1 Ralstonia pseudosolanacearum strain LMG 9673 isolate LMG 9673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47888 29 100.0 32 ............................. GCAGTCCTGTTCACCATCGACTGCACGGCAGG 47827 29 100.0 32 ............................. CGGGCAAACCCGTGTTCCCGATGTTCCGCAAG 47766 29 100.0 32 ............................. ACGCCAGCGGCCGCCCGGTTTTCGTGCCGGGC 47705 29 100.0 32 ............................. CGCATTCCGGAGAAATATCTGGACGACGTTAC 47644 29 100.0 32 ............................. CCGGTCACGATCGACCATCCCATGGACAGTGT 47583 29 100.0 32 ............................. TTAAAGGTGGTGATCCAACGGAAGATGCGCGA 47522 29 100.0 32 ............................. AACGCCATCACCTCCGCAGCGCAGGGCGTGGT 47461 29 100.0 32 ............................. TTTGAGCCGGTAGAGATGACGTACACGAAATG 47400 29 100.0 32 ............................. GGCATCGAGGCCGGCGATCCGGTGGGCGTGAC 47339 29 100.0 32 ............................. GATTCCTCCGACATGACCGGCACACGCCGCGC 47278 29 100.0 32 ............................. GCGGGATGTTCACGGCCAGCGTCTTCTTCACG 47217 29 100.0 32 ............................. ACTTCCGGCCGTTCGCGCCACGGCCCTTCGGC 47156 29 100.0 32 ............................. GAACTCAAGGAATACCGGGTTGCGGTGGAGGC 47095 29 100.0 32 ............................. AATGGTTGATTCCGCGGAACAAGAATGCTTTA 47034 29 100.0 32 ............................. GCTTTCTCCAGGGCGTAGTCGCCCACCAGTGC 46973 29 100.0 32 ............................. TCGCCGGCGTTCATTACACAGCACGTCACGCT 46912 29 93.1 0 ..............C..........C... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCTATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCCTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGATGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACTGATATCCACGGGCTGGTGGAGGAGGAGATCGACGGAAAGATGGGGTACTTTGTCGACTGCGTGCGGTAGGGTGTTGTCGCGAGCTTTTGTCCGGCGGTAGATCGGTAGATTTTTGTGTGCTGATTTTCCGCTTTTGGATCAAGGGGTTGCGTTAAGT # Right flank : AGCGGCAACGATCACACCGGTGCGACGTTCGCGAGTTCCCCGCGCATGTGGGGATAGGCTACCAACCAGCCACAGTTCCCGGGCTGCCTGCAGGGGAACAAAGAAAGTCCGCGGATTAATCCCTTTCCGGTCTCTCGATTGGGTAATCCTCATATTTTCTGAGGCCACCAAAGAAAACCAAAATAAATACCCACGAGACTGCTACGATCCCCAGCTCGGAAGCCCGTACAGATAGTCCAATTTCCTGGCATCAAAAACATGCATCAGGCTGACATGGGAAAAGGGGAACCACGATACTTTGCGTATTGGGGGAAGGCACGCATGCAGGAAGGTGCCAGCCAGCGATATCACCTGCTGGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTTCTCTTGCATCGCTGGCTGCAGAACTCGGCTGGCCGTTGCCGGTCGTCAACAAGATATTCGCGTGGTTCCTGGCGCTGCACGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //