Array 1 56180-55480 **** Predicted by CRISPRDetect 2.4 *** >NZ_NORR01000001.1 Escherichia coli strain MOD1-EC6785 MOD1-EC6785_1_length_434269_cov_25.2344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56179 29 96.6 32 ..........................T.. AGCCAGACACATTGCTTTATCGCGCCACGCTG 56118 29 96.6 32 ..........................T.. GCGAGTAAGAGTATTGAGTATTTTAATCTCAT 56057 29 96.6 32 ..........................T.. GCCATAGACTTTATTAACTTCATTGGGGGTTA 55996 29 96.6 32 ..........................T.. CGTATCACAACCGGCCTCAGTACGTATCAGAA 55935 29 96.6 32 ..........................T.. AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC 55874 29 100.0 32 ............................. CGCAGTTCGCTACCGAGCGTGGTTTGCTGGTC 55813 29 100.0 32 ............................. GCGCACAGCGACGCGAAATCAACGAAAATTTA 55752 29 100.0 32 ............................. CGATCACCGGCGGCGACCTAGTGGAGATTGAC 55691 29 96.6 32 .......................C..... TCACCGAACAGGAGGGGCAGAGTGCTGGCCGA 55630 29 100.0 32 ............................. CAGGGAAACCGTTCGTACTTATCGACCTCAAC 55569 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 55508 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGATCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAATCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82826-81882 **** Predicted by CRISPRDetect 2.4 *** >NZ_NORR01000001.1 Escherichia coli strain MOD1-EC6785 MOD1-EC6785_1_length_434269_cov_25.2344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82825 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 82764 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 82703 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 82642 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 82581 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 82520 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 82459 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 82398 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 82337 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 82276 29 100.0 32 ............................. GTATTGCAGAGCCTGATGGGGCATAAGTCGAT 82215 29 100.0 32 ............................. AGCTTTATTGTTTTCAGGGAAAATAACGCGGC 82154 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 82093 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 82032 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 81971 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 81910 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //