Array 1 4669-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTQ010000031.1 Bacillus rubiinfantis isolate MGYG-HGUT-01475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4668 32 100.0 35 ................................ CCCGGTGGAACCCAATCTGTTGCTCTAACGAGAAA 4601 32 100.0 36 ................................ TCATTCTATGTGGGTTCCATCAATTGGAGACATATT 4533 32 100.0 36 ................................ ACCGTTTATGGACAACCTGTTGCCCAAGGACGTCCT 4465 32 100.0 33 ................................ AAATTTTGGAGTAATGACCAGAAGCCACGCACT 4400 32 100.0 35 ................................ CATCAAATGTTGTAGTCTTAACATTTGCACCCATA 4333 32 100.0 35 ................................ TGCTAGTGCTGCCACAATTGTGATAAATAGCTTTC 4266 32 100.0 35 ................................ GAATAGTTCTGTTTTGGTGATGTCCACTTGAATAC 4199 32 100.0 35 ................................ ATGGTAATGAACAATTGATTGATGAATGGTTTCAG 4132 32 100.0 34 ................................ CCTTTAGGTTACGCTGAAGACTTTAGGGCTTATC 4066 32 100.0 34 ................................ TGTGGCCGTCAGGGTGCTGGGAAAACTACTGCTA 4000 32 100.0 35 ................................ CTAACTCGTTTCATGCTGTACTCTCGATCGTGACT 3933 32 100.0 34 ................................ ACTTTCAAAGCGAATAAATTTTTGTTATAACCAT 3867 32 100.0 35 ................................ TTTTATCAGTTGACGGCAAACAATTATTACTTGGC 3800 32 100.0 34 ................................ AAACCATTCACAGTCATTATGGAAGTTGATGAGG 3734 32 100.0 33 ................................ ATTTTCTTTCGACCGTTTTTATGATTCTGAGGA 3669 32 100.0 34 ................................ AAGAAGAAATGCTCAAACATACAGACACCTATCT 3603 32 100.0 35 ................................ TGTACAAGGCAAGTAAAGAGCTGATGCGGCAGAAT 3536 32 100.0 34 ................................ TGAAAGCTTGTCTCGCGGTGTATCCGGGTCAATT 3470 32 100.0 34 ................................ CGCATGGATACTGCGCTGAGGTTTGTTGCTTTGA 3404 32 100.0 34 ................................ ACCCATTATGTCGAAAAATGATGTAGAAATATAG 3338 32 100.0 34 ................................ CGCACCATCAGTAATCTCCACAACTGGTATACTG 3272 32 100.0 35 ................................ ATAATATTGTCTAGTGTAGATCCACCCACAACACG 3205 32 100.0 34 ................................ AAACCAATATTTAACTCTTTCAACAGTCATATCA 3139 32 100.0 33 ................................ TTTTACATGGGCATACGGTATGAGCGCAAGGAA 3074 32 100.0 35 ................................ ATCGCTAAATACTCTTGTATAAGTCCGAATTTCTC 3007 32 100.0 33 ................................ GCTTTATACTTTTTGAAAAAATCACGCTTGTAA 2942 32 100.0 35 ................................ TTACCTGACTCTTTAGCAGCTTCAATTGCCGCATC 2875 32 100.0 35 ................................ TGATTTTGCCCACGTATATTTAACAGACGGTTTAA 2808 32 100.0 34 ................................ ATAAATAGCCCAACCATTTTTATCACCTGTTTGC 2742 32 100.0 33 ................................ TCCTATTTTCAGATGTATGTCCGCTATTGCAAT 2677 32 100.0 35 ................................ TATATCACGAAGCAGGCGTATTAGAAAACTTTAAC 2610 32 100.0 33 ................................ TTGGCGGATCTCTCTTAATATCCAATACCTTTT 2545 32 100.0 34 ................................ GCTTTTAAATGGGCGAATGCGGCATCTTGGTCTA 2479 32 100.0 34 ................................ GACTGCGCCTTTGTCGTACTGTGAGTGGACATGT 2413 32 100.0 35 ................................ AAGCACCAGAGGTAGTTAAAGCGATTGAATCACTT 2346 32 100.0 34 ................................ TCACTCATCGCCACCACTCACCATATACATTTTT 2280 32 100.0 34 ................................ CAGGCATCAATCACAGCGTCCACTGGGTCAATCC 2214 32 100.0 34 ................................ TCTTTTCCAATCGCTCGGGCAGTTATAATAAATG 2148 32 100.0 34 ................................ TGTATCTCCAAAACTCCAATCCACCTTTTAAGTC 2082 32 100.0 33 ................................ TTTTATGGCGGCTTTAATGGCAATTCCTGCTTC 2017 32 100.0 37 ................................ AAATAGTAATCATATAATTTAAGCGCATTTCCTAGGG 1948 32 100.0 35 ................................ GCCCAGTGGATTTTAAATGGGACTATCGTGATGAG 1881 32 100.0 33 ................................ CGCTAATTGATTATGAAGTTGATAAAGATGAAT 1816 32 100.0 34 ................................ ATACTAAAACAGGAGAAGTTATTAACTTCCTTGA 1750 32 100.0 34 ................................ TGACGGTCAATGCTTTGTTCCAGCTTGTCATAAA 1684 32 100.0 35 ................................ TTTTTTTATTGTCGATGGCTTGCTGTATCACATCG 1617 32 100.0 34 ................................ TAACCGCTGGGCCATGCCATATTTTAGAGCCGGC 1551 32 100.0 34 ................................ CGAAGATTTAGCGACATAAAAAAAGACTTAGCTT 1485 32 100.0 34 ................................ CTTTACGTTCTACAATTAGACCATTGGAAAGGAC 1419 32 100.0 35 ................................ AACAACACCGCCAGTTCCAGTGATTTTTCTGTATG 1352 32 100.0 34 ................................ CAATTAAAGAAAATGGGTATTTAACAGTAATAGT 1286 32 100.0 34 ................................ GGCATCTAAAAAGAGGGAGCTTATCAATCGTGTT 1220 32 100.0 34 ................................ AATTGCCTTGCTTACAATCCCATTCGCGTGTGGT 1154 32 100.0 34 ................................ ATTCATGACACTAGCTGTCTTGTGATTTTCGATT 1088 32 100.0 34 ................................ AAAATAAGAAAGTTGGTGTTAATTATGAGCTCAT 1022 32 100.0 34 ................................ CGTAAAAGACATTTTTGCCTGTTTTTCGGAGTTG 956 32 100.0 35 ................................ AAAACGGAGACTGGGTGGAAACTGATATGGAAAGC 889 32 100.0 34 ................................ CTGTGCTTTCGGCTGGTTAACCGGCTCCGGAGTT 823 32 100.0 32 ................................ GAAAAAACCAAAGTTTACATCGGAACATCTTG 759 32 100.0 34 ................................ GTAGCAGTGCCATTCGAATTCCCCAGCCGATGCC 693 32 100.0 34 ................................ ACATATAAGTGTTTTTTATTAATTTTGAATCTAA 627 32 100.0 34 ................................ GCTTACTCAACCGAAATAAAAACAGTTACACCTG 561 32 100.0 35 ................................ TTATGAAAGAACACTACGAAATATACGCAAATTTG 494 32 100.0 34 ................................ CTCTTGCCAGTCATGATCCTTGCTAGATCTGGCA 428 32 100.0 33 ................................ TTCCCATTGATTGTAATGAATGATTTTGAGTAA 363 32 100.0 34 ................................ TTGTAAGGTTTGGAGGTGATTACCTTTGATTTTT 297 32 100.0 35 ................................ AAGTGCTGCTACAACATCCTCATCCACCCCACCCA 230 32 100.0 35 ................................ GGCGAGGAGTGTAAGGGGCACTGGGTACTGAGTGC 163 32 100.0 34 ................................ GCAATCCAAGTTAAGGGGTTAACAGTCGCCACAA 97 32 100.0 34 ................................ GTAACTTCTAGTTTTATTAAATTCCATCTTTTCA 31 31 96.9 0 ...............................- | ========== ====== ====== ====== ================================ ===================================== ================== 71 32 100.0 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGGACGAATATCCTCCATTTCTTTGGAAGTAGGTGTTCCACTTGCTTGTATTGATTACGTATGATGTATCTACAGTTGATAGTAAAGGAAAGAAGAGATTGCGAAAGGTTTCAAAAGAATGCCAAAATTATGGTCAACGGGTCCAAAACTCAGTTTTTGAATGTAATGTTGATGCTACTCAATTTACCTTATTAAAGTTAAGGCTAATGGATATAATTGATCCAGATAAAGATAGCCTGCGATTCTATCAGTTAGGCAATAATTATAAGAATAAAGTGGAACATGTCGGGGTAAAGGAATCAATTGATATAGATGGCCCTCTAATTTTCTAGTGCGAATATGTAGCTCACATAATTTACTAACTGCTTTCGCACCAAATATTTTGTCAAATATTGTTGTATTCTTGTATAGTTTCTTTAAATGTTCTTTAGTTAGCTAAAGAAAATGGCGAATTTCTAATTAAATTTATGTATTACAGCTATTTTTGATTAAAATTCGCA # Right flank : A # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 328372-319070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTQ010000030.1 Bacillus rubiinfantis isolate MGYG-HGUT-01475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 328371 32 100.0 34 ................................ TTGTAAGGTTTGGAGGTGATTACCTTTGATTTTT 328305 32 100.0 35 ................................ AAGTGCTGCTACAACATCCTCATCCACCCCACCCA 328238 32 100.0 35 ................................ GGCGAGGAGTGTAAGGGGCACTGGGTACTGAGTGC 328171 32 100.0 34 ................................ GCAATCCAAGTTAAGGGGTTAACAGTCGCCACAA 328105 32 100.0 34 ................................ GTAACTTCTAGTTTTATTAAATTCCATCTTTTCA 328039 32 100.0 35 ................................ CTCATCTATTCCACTTCTTCCACCTCCGCCACCTC 327972 32 100.0 34 ................................ CTCTACCATGCTAACACTGGCAGAACCGTTGGCC 327906 32 100.0 33 ................................ ACCGCAAATTATGCACGACATACCATCTTTCGC 327841 32 100.0 34 ................................ ACAATATTTACAAATAAACTCGTAATCACCTTGT 327775 32 100.0 34 ................................ CACATTAGTTGATGGAGGGGAAGGGGCTACCTTT 327709 32 100.0 34 ................................ TTAAGTTCTGATTCTTTTTTAGCGCATCCACAAG 327643 32 100.0 34 ................................ TTTTCGACATTTACCGACAAAATAAAAAACTCCT 327577 32 100.0 33 ................................ CCCACCCCGCCGATGGCTTTTTTCCAATGGCAG 327512 32 100.0 32 ................................ TAAGCCACCTTTTAAGTCCAGGATAATAAACC 327448 32 100.0 34 ................................ AAAACTTTGGCAATTGGAGAATCCGAAACAGCAA 327382 32 100.0 36 ................................ TAAATCCTCAAGCAAGTCTAGTACAAACTGAATATG 327314 32 100.0 35 ................................ TTTTCGAGATATACTCATCATAATTAATCTTGCCA 327247 32 100.0 35 ................................ CTTTGTAAATTCGCCACCATCAGCAAAATACTTTG 327180 32 100.0 35 ................................ TTTTTTAGGTCAGATGTAATCTGGTGTAACACCTG 327113 32 100.0 33 ................................ ACAGGGCGAAATGCTGTTAGTTCGTGAGTTTTG 327048 32 100.0 34 ................................ TTTTTATTTGTTTAGCTTTAGCCTTAACCTCATC 326982 32 100.0 36 ................................ TCGAGTACACAGGCGACTTAGACCAAAAGGCAAAAG 326914 32 100.0 35 ................................ TGCAAGTTGCGATAAATAAGAAACACCGCCAATAT 326847 32 100.0 33 ................................ TCTCTATTGCAATTATATTGGGGGTTATTCTAT 326782 32 100.0 33 ................................ TTCCAGGCCTGATATATTAAACGTGTCGGCATT 326717 32 100.0 34 ................................ CTTTTCGTATAGGTGACAAAGTGAAAATCATTGA 326651 32 100.0 35 ................................ GCCTTTTTCTGTAACAAATACTTTACTCATACTAA 326584 32 100.0 34 ................................ TTCCATTTTAGATTAAGTTAATATCTGCCAACCC 326518 32 100.0 35 ................................ GTGTATAGCTGTATGTAATGTGGAATCTTGGCGTA 326451 32 100.0 35 ................................ GCTGTGGTCACAAACCAGAAAGGAGGGAAGGAAGG 326384 32 100.0 35 ................................ CGAAAAGTTGGAAATCTGAAGTAACACCACGTAGA 326317 32 100.0 36 ................................ CAGGGTGACCAATGGCGCAACCTCGAAGCCGAGAAC 326249 32 100.0 34 ................................ AGGAAGCACCCGTTTGGGCGATTGAACTAAGCGG 326183 32 100.0 34 ................................ CCCGCGCCCCTTGTCCCCTTCGGCAGGCGCCAAC 326117 32 100.0 34 ................................ TGGAACTTCGTAATCAATACCAAAATAGTCTAAC 326051 32 100.0 33 ................................ ACGGCTTGCTATTATAAAAGGCAGCTGTCGTCT 325986 32 100.0 34 ................................ ACGTAATTTTTTATTAATATCTATATTAGACAAC 325920 32 100.0 33 ................................ TCAAGTGATGGAAAAGTATTTGACCGAGATTCT 325855 32 100.0 35 ................................ GGCAGCTTATCATAATACTGCCACCACTCGCGTTT 325788 32 100.0 34 ................................ TGGTACGATTACCTCATCAATTTGGCGCGCTAGT 325722 32 100.0 35 ................................ AGTGTGACTATCACACCACCACCACCACCACCACC 325655 32 100.0 35 ................................ GCTAGGGAAATCCGCCTTTGTCAATGCCTTGCCTA 325588 32 100.0 34 ................................ TTCCCGGTTTTTAATCGGGTCATCTATTATCATT 325522 32 100.0 35 ................................ TGAGTGCTGTTGCAATGAGAGAAATGGCTGACTTT 325455 32 100.0 35 ................................ GTACCGTCTGCCAGTAGCTTGTACATTTGATTGTC 325388 32 100.0 34 ................................ ACAATATTTACAAATAAACTCGTAATCACCTTGT 325322 32 100.0 34 ................................ CACATTAGTTGATGGAGGGGAAGGGGCTACCTTT 325256 32 100.0 34 ................................ TTAAGTTCTGATTCTTTTTTAGCGCATCCACAAG 325190 32 100.0 34 ................................ TTTTCGACATTTACCGACAAAATAAAAAACTCCT 325124 32 100.0 33 ................................ CCCACCCCGCCGATGGCTTTTTTCCAATGGCAG 325059 32 100.0 32 ................................ TAAGCCACCTTTTAAGTCCAGGATAATAAACC 324995 32 100.0 34 ................................ AAAACTTTGGCAATTGGAGAATCCGAAACAGCAA 324929 32 100.0 36 ................................ TAAATCCTCAAGCAAGTCTAGTACAAACTGAATATG 324861 32 100.0 35 ................................ TTTTCGAGATATACTCATCATAATTAATCTTGCCA 324794 32 100.0 35 ................................ CTTTGTAAATTCGCCACCATCAGCAAAATACTTTG 324727 32 100.0 35 ................................ TTTTTTAGGTCAGATGTAATCTGGTGTAACACCTG 324660 32 100.0 34 ................................ CCAACCTATTACGATATCCCCATAACCTCCGCGC 324594 32 100.0 34 ................................ TTTTCTAATCTCTTTGTTCATACGAGTGATATTC 324528 32 100.0 34 ................................ TTTTATAGCGGCATTAATGGCGATTCCTGCTTCT 324462 32 100.0 34 ................................ CAACGGCATACCGCTCACAGGGATAGCAACACCA 324396 32 100.0 33 ................................ ATCAAATTCCGCAACAGGTGTAAAAAGATAAGG 324331 32 100.0 35 ................................ CACGAGGATAAAGAGTTGACCATCGAAAAGGTCAG 324264 32 100.0 34 ................................ AACTGCAGATCCAGTTGTTTCTTTGATAGATTTT 324198 32 100.0 33 ................................ AAAAATGAAAAATTGGCTCCTCGGATTTATTAA 324133 32 100.0 33 ................................ CTCAGTCCTCCTTATATAGATCGTCAACTTTAC 324068 32 100.0 36 ................................ ACAAGCAAGTCGTAAAGGATAGCGCCATGAGCCGTC 324000 32 100.0 33 ................................ GCTTCCGTGCGTCTAGTTTCGCTTCAAGTGCTT 323935 32 100.0 35 ................................ CAGAATTGACTTACTGATTTAGGATCATAAGGGGT 323868 32 100.0 35 ................................ CTAACGTTAGCAATTTAATCATTAAGGCGGGTAGC 323801 32 100.0 35 ................................ CCACGTAGCAAATGGGGATGGACCAAAGAGCAGGA 323734 32 100.0 34 ................................ CTAAGCATCGATATGATTGCAGGACCGTTTGCCT 323668 32 100.0 34 ................................ TGCAAGAGATGTTGAGGAATTATCTCCGATGACT 323602 32 100.0 34 ................................ TCCTTTCAAAGTAATGTCCTTTGCATTGCTTGCG 323536 32 100.0 35 ................................ TTTTATGGCGGCTTTAATGGCAATTCCAGCTTCTG 323469 32 100.0 33 ................................ CACGCCAAACACGCGGAAGTCCGGCGCTTTAGC 323404 32 100.0 35 ................................ CACTTGAGGCAGAGGACAACGATATATTAGGCAGG 323337 32 100.0 35 ................................ TCCCCTTTCCAGTGCGGCGTTTGCACTGTCCAGAC 323270 32 100.0 35 ................................ ATCGATTATAACGGCGGAAACTTAGAAGACATGTT 323203 32 100.0 33 ................................ TGTCATTTTTATAACCTCCTTTAACTTAATTTA 323138 32 100.0 34 ................................ TTTTTGTTTTGCTGTCATGATGTGACCTCCTTAG 323072 32 100.0 35 ................................ CTCGATAGGCTTGTCGAATACTTCCGAAGCTACTG 323005 32 100.0 34 ................................ GGACGGATTGGCCACGGGCGCTATTGTTTTTCGC 322939 32 100.0 35 ................................ ACAGGTTGGCGGCTACGTGTCGTCCAACGTTTACA 322872 32 100.0 35 ................................ AACGACTAGGCGAAAGCCGTAGGGCGCAAGAGTGC 322805 32 100.0 34 ................................ GTCTTGCGGTCTTTTTTAATAACGTTACTGCAAG 322739 32 100.0 35 ................................ GGAAGGTTATGAATCTATCAAAATGGGCCGTCGTT 322672 32 100.0 35 ................................ AATCGGCAGCCGATGTGCCACTTCGCGAGCAAGCT 322605 32 100.0 33 ................................ ATCAGAAATTACCTCTCATGGTCTGCGACATAC 322540 32 100.0 35 ................................ TTTCCCTCGACGCCGATTAGAAAGCGTTCGTCGTC 322473 32 100.0 34 ................................ CGCTAAGTAGGCACGTTGGAAATCACGTAGCTTT 322407 32 100.0 35 ................................ TTGCCATTCTTGTTCGCTGAAATCGGATGGGTTGG 322340 32 100.0 34 ................................ CTCTTTTGCCTCCAGACGTTCGTTTATGTACTCC 322274 32 100.0 34 ................................ TTTTAAAGGAGCTGGCATATCTACATCAGGTAAA 322208 32 100.0 36 ................................ GTAAACCGGATGCGATTGCTTGCTTGTGCGACCAAC 322140 32 100.0 33 ................................ CGTGAGTCTATCAATCTAGGAGGTGAGTAAGTG 322075 32 100.0 34 ................................ ATCAAGGTTGCATCGAGCCACAATGTCGTGTACA 322009 32 100.0 34 ................................ AAGAACCGCATCGTAGATATCCAGAAGTTCAAAG 321943 32 100.0 34 ................................ ATATATCCAATGCTGCAAGTCTCGCAATCTGGCA 321877 32 100.0 35 ................................ TCCTTTTTTCCGCTCGTGTATCTGTATCCATACCC 321810 32 100.0 34 ................................ ACTTAAAAGAGATTCGGGAAAGTTTTTCCAAGCC 321744 32 100.0 36 ................................ ATGCGGATATTCGATAATATCGACTTCGCCGCCTGA 321676 32 100.0 34 ................................ ATTACTTGGAAAGTCGCGGAATCAGCGAGGACAT 321610 32 100.0 35 ................................ AACAACGTCAGCGAAAAGAGCTACGTATTGAAGCC 321543 32 100.0 35 ................................ CAGAAAGTGATGAAGTGATTTATCTAGGTAGTGAT 321476 32 100.0 35 ................................ CATCCGATGGATTAGTGAAAGTCAGAAATCAAATC 321409 32 100.0 34 ................................ AAAACTTTGGCAATCGGAGAATCCGAAGCAGTAA 321343 32 100.0 35 ................................ GTAATATATACCAAGGGGAAAACAAAACCTTGCCC 321276 32 100.0 34 ................................ GCGGATAGGGTTGGAGTGACAAACTCCACTTTAA 321210 32 100.0 34 ................................ CGGTGGTGGCGGAGGTATCGATGCTGGCGGTGGC 321144 32 100.0 33 ................................ TATTTACGGATTTTTTATCAACGGGTTATTTTT 321079 32 100.0 34 ................................ AAAATTTTTTCAGGCATTTCATTAGGTACATCTC 321013 32 100.0 34 ................................ CTATATATATAAAAGACCAAAAAAGCGTATTTTT 320947 32 100.0 33 ................................ AACAACACCGCCAGTACCAGTGATTTTTCTATA 320882 32 100.0 34 ................................ CGTCCACGACTCAACTTCTACAACAGCAGTTTTC 320816 32 100.0 33 ................................ TTCCAGGCCTGATATATTAAACGTGTCGGCATT 320751 32 100.0 33 ................................ GTGGCGCGTTACCAAATTACTCGGTGCCTAAGC 320686 32 100.0 34 ................................ ATTGGTCGCATAAACGACAGGTGACCCGTTGCCT 320620 32 100.0 34 ................................ CTCGATATGGGGATGGGGAAAACGGTCAGCACCT 320554 32 100.0 35 ................................ TTGAATACGTTCTATTGCTACCTCATACATATCTA 320487 32 100.0 33 ................................ TTTTTATCATTGCGATGGTGTGGGGAAATATAA 320422 32 100.0 35 ................................ TTTGAAGTTTGTATATAATCCGGGGCGCACTGGCA 320355 32 100.0 34 ................................ GCATGCCTAACGAAATTCGAAGCGCTTGAACAAA 320289 32 100.0 34 ................................ GAAGAGGTAAATAGCAAAATTGATGATATTGACG 320223 32 100.0 35 ................................ ACTATTTCGTAATCAACCGCAAACCCGTCAATCGC 320156 32 100.0 34 ................................ ATTTTTGCCATCGACTTTGCCGACAACCTGCTCG 320090 32 100.0 34 ................................ ACTTAGAACAAACTAAATGTTCTCATGAGTTTGG 320024 32 100.0 33 ................................ ATTGCAGCAGCGGAAAAACTCTTTTGTGTATTT 319959 32 100.0 33 ................................ TTTCGTCAATTTCGCCAAACAGGTTTAATTGCT 319894 32 100.0 34 ................................ AACAAAACTGCCTTCAGCAAAACCAGTTAAAAAA 319828 32 100.0 35 ................................ CGAGCCACCTCGTATTTTTATCAGGCTCGTATCAA 319761 32 100.0 34 ................................ GACAATAGTCTTAATAGGGTTTGGTATCTCCATA 319695 32 100.0 34 ................................ GCCAATCCCAAGCCGAATCCGTGGGACCAATGAG 319629 32 100.0 35 ................................ TTCTTTTATAGCTTGAGTGTCCTCTACAAGATCAG 319562 32 100.0 36 ................................ CGCAATGATAGAATCAATAGTTTACGAGACTCAGAA 319494 32 100.0 34 ................................ ATATAGCAGGGATAAGTATTTTTGTATGTTTGAG 319428 32 100.0 33 ................................ GGTACTGTCTTTGCCGTGCCATCGTCTTGTGTT 319363 32 96.9 33 .........T...................... CTTGTTGTTATTCGGAGGGTTTGGATAAATCCT 319298 32 93.8 33 ..............................TG CAATCTCGGCCATCCTCTCGGAGCATTGGGAAG 319233 32 96.9 34 .........G...................... AAAATATCCAGCTAATAAAAAATGAAAATGGATT 319167 32 96.9 34 .........G...................... AATCCCTTAAATCGGGTCACTATCTTTGCAGCAA 319101 32 75.0 0 ..T....................ACAA.CT.G | ========== ====== ====== ====== ================================ ==================================== ================== 141 32 99.7 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : A # Right flank : ATAGTACAAGCAACAAACTCAAGAATGTAGGTCGAAATTTGTACACAAAGACAACCAGTCGATCTCGACTGGTTGTACCCTAAGAAAAAATATTTACTTCACCAGCAGAACCCTTTCCTCCGCCAAACTAACCTTATTCCTTCCGCTTTCCTTCGACCGGTACAGGGCTTCATCGGCTTCCTGCAGGAGGAAGTCCAATGTGTTTGCATCGGGAGAAAGGGATGCTACACCGAAACTGGCTGTAATGGAGATGGTTTCTGTTGCTGTTTGCAAGGGAGTGTCTTGAAGCAGCTTTCTTACTTTTTCGGCGATGATAGCTGCGTTTGTTCGATTGGTATTTGGCAGACAAGCGACAAACTCCTCGCCTCCGTAGCGGGCAAAGGTATGTTCGGACTGCAGGCCGCGTCTACAGGTGTCGACGACATGGCATAGTGCCAAATCTCCTATACTATGACCGTATTTATCATTGATTTTCTTGAAAAAGTCGATATCAAATAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //