Array 1 119-667 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCXP01000001.1 Bifidobacterium longum strain bk_0021 Scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 119 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 183 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 247 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 312 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 376 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 440 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 504 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 568 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 632 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 98.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GCAGGAACACCTCCGCGCAACCGGAAAAATAAGGAAAATGCATGCAACTGCCTAAACCCGAAAAAAATACATGACTAGACACGAAACACCGACTTGACGAAATACACTTGTAGGTGGCC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 211000-211344 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCXP01000002.1 Bifidobacterium longum strain bk_0021 Scaffold_0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 211000 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 211066 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [211072] 211150 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 211210 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [211258] 211258 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 211315 27 85.2 0 ..............C.....C....CG | GC,C [211333,211337] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGGTCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCAACGGCGTCGATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGACCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCAGGCACGTGCGGGTTGGCAATGGAATCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1057-2442 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCXP01000035.1 Bifidobacterium longum strain bk_0021 Scaffold_0035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1057 36 100.0 28 .................................... CCACTGGCTGTCGCCCGCCGCGCCGATC 1121 36 100.0 28 .................................... ACGGTCATGTTGGCGACCTGCTCACCAC 1185 36 100.0 28 .................................... ATGCTCACCGTCAGCCTCGGGTCGAAGG 1249 36 100.0 29 .................................... CGACCACAAGCGCACCGCCAACCTCGAGC 1314 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 1378 36 100.0 28 .................................... GAAAACGAAGATGAGACCGTGCCTGATG 1442 36 100.0 28 .................................... AAAAATCAGGTGTTAAACATGGCGCTAA 1506 36 100.0 29 .................................... CTTTCTATATTAATAAATGTTAAGGCTTA 1571 36 100.0 29 .................................... AGGATGCGGGCGAGGTCGTCGTGCTGAAG 1636 36 100.0 28 .................................... CATGGCGAGCCGGTGTGCGTGGAATGCA 1700 36 100.0 28 .................................... TGTGTCCGGAGCCGAAGCTGCCCGACCA 1764 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1828 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 1892 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1956 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 2020 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 2085 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 2149 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 2214 36 100.0 28 .................................... GTAGGTACGTGGATACGTGGTCATGGGC 2278 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 2343 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2407 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 22 36 100.0 29 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCTTGCGCGTACTGTGCTTGTATGTTTGTGTTCAATTAGTTGTTGCGGGTTTAGTCACGATGATTTTTCGGGTTTAGGCAGAGCATGCCGACCACGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //