Array 1 95520-94823 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VYQR01000027.1 Streptococcus agalactiae strain GCH38 27, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     95519	    32	 100.0	    35	................................	ATCTTTGTTTCAAAATCAACGTTATCCATGATAAA  	
     95452	    32	 100.0	    36	................................	TTATCTGTTAAATAGATTGTCATACCCTTTTTAGCA 	
     95384	    32	 100.0	    33	................................	TTCTAGGTCAATCAATTCTTGTGGTTTATCATG    	
     95319	    32	 100.0	    34	................................	ACTCATTAAGCGTAATTCCGTGTTGTCAGGTGTA   	
     95253	    32	 100.0	    37	................................	TTTAGTACCATATGGTTGCATGGCATTTACCAATACT	
     95184	    32	 100.0	    35	................................	TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC  	
     95117	    32	 100.0	    34	................................	TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC   	
     95051	    32	 100.0	    34	................................	TATTTTATATTAAAAATAAGACTACCATAATTAT   	
     94985	    32	 100.0	    35	................................	TAGCTGATAGCCTGCAATATACAACCATCCGTTTT  	
     94918	    32	 100.0	    33	................................	TAATAATGATTATTTTTTTATTAATTCATTATC    	
     94853	    31	  78.1	     0	A....-.............T..A.T..C..C.	|                                    	
==========	======	======	======	================================	=====================================	==================
        11	    32	  98.0	    35	GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT	                                     	       

# Left flank :   CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT
# Right flank :  ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAGG

# Questionable array : NO	 Score: 9.16
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT
# Alternate repeat :   GTCGCACCCTTTGCGGGTGCGTGGATTGAAATA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [10,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.50,-4.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.01,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//