Array 1 2239971-2235719 **** Predicted by CRISPRDetect 2.4 *** >NC_020230.1 Corynebacterium urealyticum DSM 7111, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 2239970 28 100.0 33 ............................ GGCGAAGTCCTTCAAGGACTCCATCATGAAAAT 2239909 28 96.4 33 .............C.............. CATCCCAAAATACGGAACAAAAGCGGCCAGCAA 2239848 28 96.4 33 .............C.............. CGGGTGTGTAGACCCCTCATGGTTGAACTGTTG 2239787 28 100.0 34 ............................ GTGGCGTCATGAGGTACGTGCCGTCGGGCAAGTG 2239725 27 96.4 33 .....-...................... GTCGAGTGAGAAGACTAAAGCTTCTCGAACAGG 2239665 28 96.4 33 .............C.............. GGTTCTTAGCGAACTCCTTACTCATGCCCTTAA 2239604 28 96.4 34 .............C.............. GCTCCCTGAGGCGCCGAAGGGCGACTTGGGGGAA 2239542 28 100.0 33 ............................ TTTCCTGCATGATATGGAGGAGTTGCGCCATAT 2239481 28 100.0 33 ............................ GGGCGATGTTGTCGCCAAGGTGCAGGAGGTCTT 2239420 28 100.0 33 ............................ CTCACGGCCGTCCCTAATGCGCTCAAACTCCTC 2239359 28 100.0 37 ............................ GACCTCTCGAGGGGTGAGGAGGACATCGTTTGTACGG 2239294 28 100.0 33 ............................ GGCTCCAAAACTCGTTGAAGTCCTCGGTGTACT 2239233 28 96.4 33 .............C.............. GGCGGCGTTACCGGAAATGAAGGCGGGCCTAAT 2239172 28 100.0 33 ............................ GCGCACCACCCCCACCGGCAAGGTGCGGTGGGT 2239111 28 100.0 33 ............................ GGCAAAGAAGGGATTCGATGAAACCTCGAGTGC 2239050 28 96.4 33 .............C.............. CCCTTTACCACGCCATTCTGGGCTTGATTTGAG 2238989 28 96.4 34 .............C.............. CTGTCTGCTCCGACTGCGAGAAGAAATTCGACCA 2238927 28 100.0 33 ............................ CGGCACCGCCGAGGATACTAACCTTAAGTTGTG 2238866 28 100.0 33 ............................ GGACCGGCCGGAGCCGGTCGAAGTTGAGATTAC 2238805 28 92.9 33 ............TC.............. GAGCCTGGAGCGTCAGGTCGCCGCGTCCGAGCA 2238744 28 96.4 33 .............C.............. GGAGCCCCCACTGAATGGTGGAGAAAAGGTAGG 2238683 28 96.4 33 .............C.............. CCCGGGCGCGACGCGCCAAGTGCCAGCCCTGCC 2238622 28 100.0 36 ............................ GGGCGTTGTTGTCGCTACTGTCGCTGGCTGCTTCTT 2238558 28 100.0 33 ............................ GTGCGCGGAATGGAGAATATCCATTTCCCCTAG 2238497 28 96.4 33 .............C.............. CCGCCACCTACCGGGGGCGGGCTACCGCCACCA 2238436 27 96.4 34 ....................-....... CCCACCCACCACAATCGGCGTACTCCTCGACCCA 2238375 28 100.0 33 ............................ TCATGACATCGGTCATTCGGCACCCTCCTTCAC 2238314 28 96.4 33 .............C.............. CTGCGCTACGCGAACAACGGAAACTCCGTCACA 2238253 28 96.4 33 .............C.............. CACAGTCCCAGCCACAAACGCCAGAAAGGGCAC 2238192 28 100.0 37 ............................ CCATGAGTCCCGGCGGCTGTATCAGGCCAGGCGCCAG 2238127 28 100.0 33 ............................ CAACTCACCACCTACCACAAGAACCCACGCCAA 2238066 28 100.0 32 ............................ GTCTGGGACAGCACCGACAAGGTGGACATCCA 2238006 28 100.0 33 ............................ GCCAGGTCATTCACCAGAGCCCGCCCAAAGCTC 2237945 28 100.0 33 ............................ GGGGGTGGATATTTCCCAGGGCGAGCTGGCATA 2237884 28 100.0 33 ............................ GGCCACTATTGGTGTGATCGCTACGGCGATTCT 2237823 28 92.9 34 ............TC.............. TCGTGCGCGGTCGAGTGCGCAGGCGCAGGGTCAA 2237761 28 100.0 33 ............................ CGGGATCAGGTACGCGTGTCCGAGCACGCCGGG 2237700 27 96.4 33 .....-...................... CACGTTGTGTGGGTGGTCTGATGATCCGCATAT 2237640 28 96.4 33 .............C.............. TCTGAGCGTCTGGAAGAACTGGCGGGCGTTGAT 2237579 28 100.0 33 ............................ CCAGGTCACGCGGCTGGATAAGGACACCGCCAA 2237518 28 100.0 33 ............................ GCCGTGATCCACGGCGACTGCACCTACAACGAC 2237457 28 100.0 33 ............................ GGGGTGATATCTGCCAGGGCCGCGGACATTTCC 2237396 28 100.0 33 ............................ GGGGGCTGCGAGTTGCTGTTTTCCGTTGCGGTT 2237335 28 96.4 33 .............C.............. CACCATGCGGTGGAGGCTGCAGGATTACACGAA 2237274 28 96.4 33 .............C.............. CGCCAGACGCGAACTCCATAGCAGGAACCAGCA 2237213 28 96.4 33 .............C.............. CCCGGACTGGACACCCGAACAGGTCGAGGAAGA 2237152 28 96.4 33 .............C.............. CACCGCGACGACGATCTACGTGGTGCTGAAGAA 2237091 28 96.4 33 .............C.............. TGCCGGCAACGCCCTGGCAATCCTCACCCGTGA 2237030 28 100.0 33 ............................ CAGGCTCCACAGGTGCGAGTGTTCCTGCGCCGC 2236969 28 100.0 32 ............................ CAGGCTCCACAGGTGCGAGTGTTCCTGCGCTG G [2236948] 2236908 27 96.4 34 ....................-....... CAGCGTGAGTTCCTCCTTGGTCATCTTGTGCGCC 2236847 28 100.0 33 ............................ CACTCACAAGCACGGCACCGCGATTGTGGTGTC 2236786 28 96.4 33 .............C.............. TGAGGCGCGGCTTGTGAACACATCGAGGGATGT 2236725 28 96.4 33 .............C.............. CGACACGTCGGATAAAGCCACTGCTAAGGCTAT 2236664 28 100.0 34 ............................ CGTTTTGTTCCACCCACACGTGAAGGGTGAGGCG 2236602 28 100.0 38 ............................ CGTGCTCGTCGCGGCTGAGGTGCGGTCGGGGCCAAGTG 2236536 28 100.0 33 ............................ CATCACGTTCACCCCGATGCTGCGCCCGGGTGA 2236475 28 96.4 33 .............C.............. GCCGAGGGTTGTTTCCTCGTGGTAGGTGATTCC 2236414 28 96.4 33 .............C.............. CCTCCGAAGTCGGCGGGAAAGCGGTGATGGTCT 2236353 27 96.4 33 .................-.......... CCTGGTGGACGAGACCCGCGCCGCACTCGAGTT 2236293 28 100.0 33 ............................ CCTACAGTGGGCCCCGGTGAGACGCATGGGCTT 2236232 28 100.0 33 ............................ CCAGCCCACACAAGTCGGCGTACTCCTCGACCA 2236171 27 96.4 33 .....-...................... CAGATCAATCACCTGCCCGATCGGCTCAAACGA 2236111 28 96.4 33 .............C.............. CACACTCCGGCAAAACACCCTCGGTGCGCAGCA 2236050 28 96.4 33 .............C.............. TTCTGGACTGGTCCGCCCGGTTCGGGTTCGGCG 2235989 28 92.9 33 ............TC.............. CAATGCCACCGAACAGCCCGTTTAATCGAACAG 2235928 27 89.3 33 .....-......TC.............. GCCACCTACCAGAGCACCGAGACCACGTGGGCC 2235868 28 92.9 33 ............TC.............. GGTGTGGTTGGACGAGAAGTTCGACCACCAGCA 2235807 28 92.9 33 ............TC.............. CGCCTGCGTTACCGACAGCAGCCACAGCCCCGA 2235746 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ====================================== ================== 70 28 97.7 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : GCGACATTGAGCTCATGTTGTGGAGCGAGCTGGAGCTGACGTCCGCGGGCATTAATTGGGGGAAGGAAGGAGCGGAGCAGTGATGGTGCTGATCGTCACTGCCTGTCCAGCGGGACTGCGAGGGGACCTAACGAAGTGGGTTAATGGAACTCGCACCGGGGACGTTTGTTGGTAGGCCTTCGGCGCGGATTCGTGAGCTTCTATGGGATCGAACGGTGGAGTTGTGCAAGGACGGCCGTGCGCTGCTGGTCTACAGCAGCAATAACGAGCAAGGTATGGAGTTCCGCACGCATCGGCATGACTGGGAACCCACCGATTTTGACGGTCTTAAGCTCATGATGCGCAAAAGCGATATTGAGAAAACACGACGCAGAACGGGTTGGAGTAGGGCTCGTCAATTGAGACGGAAGTACGAGGGCCGGTAATTCGGCACTGGGGGTGGCTTCGTACAGTTGAAGCTAGAATGAGGCTTGGGCTCGAATATCCGCTGATCATACAGT # Right flank : CTCGTCCGTGCGCCTGTTCAGTGCCTCCTGGGCCTTCTGCAGTTCAGACTTCTCTGCCTCCTGCTGGGTACGCCACGCTTCCGTGTCCTGGCGCAGTTCGTTGCGTTCGGTTCGGTAACGGGCTGCTTCCCGGCGGGCGTCCTCGAGCTCCTTGCGGAACGATTCGGGGATATCCGGGGTTTCCTTAGCCTGCGTTTCTGGCGTGGTTGGCGTCGCCTCCTGGGCGTTAGCCTGTGCCGCCTGGTTGTCCTCGGCGGCGGGAGTGTTCTCTGCCATTGGGTTAAACCTCCTGGGCCTTAAGTTCTAGTGGTCGTTGCAACACTGATCTGAAGGGTTGGTGTTGGTGATGACGGTGTCACGGTGGGATCCACCGGTTGAGGAGATCACTCGGTTTCACCAGTTGGTGGTGGGTGATGGTTTGTCGGTGCGTGCGGCTGGGTTGGATCTGGGATGGTCGTTAGCTACGGCGTATCGGATTGCGCATCGTGATGGGTTACCAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //