Array 1 38279-37977 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEG01000008.1 Aggregatibacter actinomycetemcomitans strain PN_567 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 38278 33 100.0 36 ................................. CTTGCTGCTTTGCATACTGTAATTAGTGGTGATGAC 38209 33 97.0 35 ................................T ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 38141 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 38075 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 38009 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 95.2 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7115-122 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEG01000005.1 Aggregatibacter actinomycetemcomitans strain PN_567 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7114 28 100.0 32 ............................ TTATCATCGTGTTTATGGCTGGGGAATGAACT 7054 28 100.0 32 ............................ ACGATATTTAAACGTGAGATAAGTCCTTCTTC 6994 28 100.0 32 ............................ ATGGAAAGGCTGCAATAGATAGAAATTGTCGA 6934 28 100.0 32 ............................ TTTTACTACACTTACCAGCATTTCACCTTCTA 6874 28 100.0 32 ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 6814 28 100.0 32 ............................ TCAGCGCTTCAATTTAACGATTTTTATCTCAT 6754 28 100.0 32 ............................ GGCTGCAATTGTAGGCATACATTATCGCAAAT 6694 28 100.0 32 ............................ ATGAATTTTGGTCATTTAGAAATGATAAGAAA 6634 28 100.0 32 ............................ TATCTAAATCAGGCATTGATGTATTTTCTGTT 6574 28 100.0 32 ............................ ACCTTCTCTTTTCATTTTTTACCCCTTATTTG 6514 28 100.0 32 ............................ AATAACACAACATCAAGCACGTAATCGTTACG 6454 28 100.0 32 ............................ TGAAATTGTCTCAATAAGTTTTTAAGGTGAAT 6394 28 100.0 32 ............................ TACAATCAATGGATAGGTTGGAAATTTGTAAA 6334 28 100.0 32 ............................ AATTACCATGAAATAAGTCGACAAATTTTTCA 6274 28 100.0 32 ............................ TTAACCCTTTCTTTGATACAAATAATAGCATT 6214 28 100.0 32 ............................ TTCTAAAGCCGGTTGATGATATGGGGTATCAT 6154 28 100.0 32 ............................ ATTGATACATACCTATCCTATATTTATCAATA 6094 28 100.0 32 ............................ ACAATCAGTTCTAATGATGAACTATGTGCAAA 6034 28 100.0 32 ............................ AAACAATTTATTAGAAGTTAAATTGTTATGTA 5974 28 100.0 32 ............................ ACCATACAAGCTTAAGCCTAATTTGCGATAAT 5914 28 100.0 32 ............................ AGAATTTGGTTTTGCAAGAGAATTAGACGAAA 5854 28 100.0 32 ............................ GTCTCTTTGATATAAATAATACCATTTTATAA 5794 28 100.0 32 ............................ ATATTGCCGCAATATACATAATGCATTCCGCC 5734 28 100.0 32 ............................ TATTTCTCAATCAAGACAAAACAAGAAAGGTA 5674 28 100.0 32 ............................ TAATGTTTCATAGAGATTGATAAAACGTTGTT 5614 28 100.0 32 ............................ AGTATACAACCCGTTTTGATCTAATTCCCTTG 5554 28 100.0 32 ............................ ACGATATTTAAACGTGAGATAAGTCCTTCTTC 5494 28 100.0 32 ............................ AAATAGCTTTTCTGATTTAGGGGCAAGTCTTG 5434 28 100.0 32 ............................ CGTGTCATATTTTTTACCACGATACAAACTTA 5374 28 100.0 32 ............................ AACAGACTCAGCGCCTATTTCTCGATTCCGGT 5314 28 100.0 32 ............................ ATAGGCAAAAATTAAGACCTAGGGGTGGGGGG 5254 28 100.0 32 ............................ ATGAATTTTGGCCGTTTAGAAATGATAAGAAA 5194 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 5134 28 100.0 32 ............................ TAAGTTATTGATATTAATTTTGTTACAGATTA 5074 28 100.0 32 ............................ TATCCGCTCTCTTTGATACAAATAATAGCATT 5014 28 100.0 32 ............................ TCTAAACAATTTCATCAAACTCATAGTTAAAT 4954 28 100.0 32 ............................ ACATCAAATTTTAAGTGATGAAGAAATAGACC 4894 28 100.0 32 ............................ AAATTCTTCATCTAAATCTTGATTTAATCTTG 4834 28 100.0 32 ............................ TGTGTAATTAAAGGCAGTTTTGAGAGAAGTTA 4774 28 100.0 32 ............................ AAATTCATATAATTCTATAGTTTGCAACAGCT 4714 28 100.0 32 ............................ TCAAATTTAACACATTTCCAACCATAAATTTT 4654 28 100.0 32 ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 4594 28 100.0 32 ............................ ATGAATTTTGGCCGTTTAGAAATGATAAGAAA 4534 28 100.0 32 ............................ ATATAATAACGGCAAGCGCCGTTATTATCTTT 4474 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 4414 28 100.0 32 ............................ GTTATTACATCGATTATTTGCAAGCCTCAAAA 4354 28 100.0 32 ............................ AATGCCGGTTAGACCCAACAAAACAAAATAAT 4294 28 100.0 32 ............................ TTATATATATCGTGTAAAAAATGAAAAAAATA 4234 28 100.0 32 ............................ AACAGAATTTTGTTCCACAAGTAGGGCAAGGT 4174 28 100.0 32 ............................ AACAAAACCTGCTATAGAATATGATGTAGCAA 4114 28 100.0 32 ............................ TATCTGCTCTCTTTGATACAAATAATAACATT 4054 28 100.0 32 ............................ TTTACCGTCTGCACATTTAGTTACAATTGTCA 3994 28 100.0 32 ............................ AAATTCGCCCTGTATGGTTAAAAAACATTGAC 3934 28 100.0 32 ............................ ATAACGATTACGTGCCTGATGTTGTCTGATTT 3874 28 100.0 32 ............................ TTTTTTAAATTTGTTCTCAAAATCAATAAAAC 3814 28 100.0 32 ............................ TTGAATTGTTAAATTTCTGTTAAAAAATGTAA 3754 28 100.0 32 ............................ TTTACCTGATTTGTTGTATAGGTCCAGTAGTA 3694 28 100.0 32 ............................ TGTTTTTCCATCAATTAACAATAATTCTTCAC 3634 28 100.0 32 ............................ AATTGCCATGAAATAAGTCGACAAATTTTTCA 3574 28 100.0 32 ............................ TTCAACATTCTACGATTCTTTAAGCGATAGTC 3514 28 100.0 32 ............................ TAGCCCCTATTTAAATTAGGCATTGGCAAATT 3454 28 100.0 32 ............................ TGGGTCACCAAACCGCATATAACACGCACAGA 3394 28 100.0 32 ............................ AACCTATCCATTGATTGTAGGTTTGAAGTTCA 3334 28 100.0 32 ............................ TAAACGCACCCAAGTTGAAATAGATGTCAGTA 3274 28 100.0 33 ............................ ACTCATTAATCCCAATGCCGCAAGTTTTGCAAT 3213 28 100.0 32 ............................ TCAAGCCATTGATGTACAATTTTTTGTTCAAT 3153 28 100.0 32 ............................ TTTACCTGATTTGTTGTATAAATCTAGTAAAA 3093 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 3033 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 2973 28 100.0 32 ............................ ATTAAGACGGGAAAAATAACCATAAGGAAAAA 2913 28 100.0 32 ............................ TTTTGAGCACCTTTATTCATTAGCCTTTATTT 2853 28 100.0 32 ............................ AAGAAAACAAGCAAGTGTCACTAATCCATCAA 2793 28 100.0 33 ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCCA 2732 28 100.0 32 ............................ TGCTCCTGATCCAAATAAAATTTCTTTGAAAA 2672 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 2612 28 100.0 32 ............................ TAAAGAGGAAATCAAAAATGAATTTCAATGCT 2552 28 100.0 32 ............................ AACAAAACTATGTGCCATTGGTTGTTGCATTG 2492 28 100.0 32 ............................ TTTCCGGAAGGTGAAAATTCAGCGTAGGTATC 2432 28 100.0 32 ............................ TTTTCAAACTGTTTCAATTAAAATTTTAAAAA 2372 28 100.0 32 ............................ TTTAATTGTGGCTATTGAAAATGGTTTATTAA 2312 28 100.0 33 ............................ ATGATCGCCGTTCGGTAACGCTTTTAATTCGCC 2251 28 100.0 32 ............................ ATATGAAATTAACGATATAAATCTATTTTTAG 2191 28 100.0 32 ............................ TACTATTAAGGAGTTATAATGTATCACATATT 2131 28 100.0 32 ............................ TACAATGTATCAGGGACCGGTTTAAATAATTA 2071 28 100.0 32 ............................ TTTATAAACGAAAGTACCAATCTTATTGTTGA 2011 28 100.0 32 ............................ TATAGAAGGTAGTGAGGCAGAATGTTATTCAG 1951 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGACAGAAATTTTAA 1891 28 100.0 32 ............................ TAATCGGTCACGAATGTCGAAGAAAATTATGG 1831 28 100.0 32 ............................ CAACCAAGACCAAAAATTTTCAGATTATGAAG 1771 28 100.0 33 ............................ CAGAAATTGTAAATTGAATTTTTAAGAGTGAAC 1710 28 100.0 32 ............................ TGTGGATAACTATTCAACATTTTCGATCTAAA 1650 28 100.0 32 ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 1590 28 100.0 32 ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 1530 28 100.0 32 ............................ ACTAAAAGCTTAAAATAAATTAAGCTACCACC 1470 28 100.0 32 ............................ AAGAACATTAAAGAAGTGTCTGCTCCTGCTTT 1410 28 100.0 32 ............................ TACAATTAAAACTCCAATTTTGTGCCCTTTTA 1350 28 100.0 32 ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 1290 28 100.0 32 ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 1230 28 100.0 32 ............................ ATCGTCTAAAGAACTGTTAATATTGTTATCAC 1170 28 100.0 32 ............................ TGTTAGACCTAACAACACGAAATAATTATTGA 1110 28 100.0 32 ............................ TACGGCTAATCCATTCCCGACAGCACAACCGG 1050 28 100.0 32 ............................ AAGATGATAACATTTTGAACTTTTCTGTTCAT 990 28 100.0 32 ............................ ATGGAAAGGCGCGATGATTTGGTGCAATCCTC 930 28 100.0 32 ............................ TAAATATTTCCCGCTATAATAGCGGGATTTTT 870 28 100.0 33 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTAA 809 28 100.0 32 ............................ ACGGGCAAAAATATATCACCAGGGGGAGGGGT 749 28 100.0 32 ............................ TGTTCAATGGCGTATTAGTTCTTGTAAGGGTC 689 28 100.0 32 ............................ AGTATATAACCCATTTTCGTCTAATTCTCTCG 629 28 100.0 32 ............................ ATTCAAAATTCGCTTTGCTTGTGATATATCTT 569 28 100.0 32 ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 509 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 449 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 389 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 329 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 269 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 209 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 149 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 117 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89453-89748 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEG01000005.1 Aggregatibacter actinomycetemcomitans strain PN_567 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 89453 32 100.0 34 ................................ TGCTTTAAAGAAACTTGGTGTAGTCGATTTAAAA 89519 32 100.0 33 ................................ CAATTAAATGGTCCCGAAGGTCCAGGGCACTAT 89584 32 100.0 34 ................................ CGAAGACGCAGTGGAATCTCGTCGTTTTGAGCGT 89650 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 89717 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TTACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //