Array 1 976-1663 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXT01000023.1 Pseudomonas aeruginosa strain ENV-569 PA4_A4_NODE_72_length_10402_cov_41.2517_ID_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 976 28 100.0 32 ............................ TCACCAGCTCCTTCATTGGCTGATCCGATCTG 1036 28 100.0 32 ............................ AAACAAAACGGCGACCGCTTAGGGTCGCCATC 1096 28 100.0 32 ............................ TAGTTCTCCGCCGTCCGGCTGTTTGAGTGGCT 1156 28 100.0 32 ............................ TGACCAATTACGAGACCGTCCGCGACGGCAAG 1216 28 100.0 32 ............................ CATGGCAGCGCGCACGTCGTACTGGGCGATCG 1276 28 100.0 32 ............................ TTTTCCTGGCCGCCGCCACCTGCCGCCGAAAC 1336 28 100.0 32 ............................ GGCAGATGAGCAGGAGGGTGACGAAGATAACG 1396 28 100.0 32 ............................ AGATTGACAGGCGCCGATTGTAGCCGATAGCC 1456 28 100.0 32 ............................ GTGGAGCGGTTGAACGCAGCCAACCGCGCCTT 1516 28 100.0 32 ............................ TCAACTAAATGGGTCGTACGTGGATTGGTGCG 1576 28 100.0 32 ............................ ACGCGATTGAACATTTCTGCCCAACGGGCAAC 1636 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4861-4291 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXT01000114.1 Pseudomonas aeruginosa strain ENV-569 PA4_A4_NODE_93_length_4910_cov_40.8961_ID_185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4860 28 100.0 32 ............................ GGTCATAGGGTAGGGGGAAGCTTTTCTCCCCC 4800 28 100.0 33 ............................ GCGCTCGATGTTCGCCCCGCGAGACCGCTCCCA 4739 28 100.0 32 ............................ ACCGACTACCGGGGCCGGATCATCACCGGAAC 4679 28 100.0 32 ............................ GATCACCGGAGCACCCTCTGGCTGCGCCGGGG 4619 28 100.0 32 ............................ GGGATGCAGCCCAGGCGGTGGAGCAAGCGCGG 4559 28 100.0 32 ............................ TCCCCCTGCTCCGGCTCCAACTCCAGCTCCAC 4499 28 100.0 32 ............................ TCTGGCGAACTGCGCGGCCTGCACCTGCTCGA 4439 28 100.0 32 ............................ TAGAGCCATAGGGGGCCTCGTTATCGGGGTGA 4379 28 100.0 32 ............................ TGAGGCAAAGGCAGCGTGAGGATGATGTGAAG 4319 28 82.1 0 ......................G.CTTC | C [4294] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCT # Right flank : CACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31344-31671 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXT01000033.1 Pseudomonas aeruginosa strain ENV-569 PA4_A4_NODE_15_length_133939_cov_37.8186_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31344 28 100.0 32 ............................ TTCACGGCTCCGCAGTCCGAGCATTGAAGGGC 31404 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCACACGCCCAGGG 31464 28 100.0 32 ............................ AGGTCTAAAAGTGCTAGCAAATTTTCCCGCGG 31524 28 100.0 32 ............................ TGAAAGACCGCGAAATCAAGTCGCGCTACGAC 31584 28 100.0 32 ............................ AGAGAGTCGAGTTCCAGCACCTGGCCCTTGGA 31644 28 92.9 0 .C.........................G | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGTCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGGCTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTGTCTCTCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1981-1233 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXT01000064.1 Pseudomonas aeruginosa strain ENV-569 PA4_A4_NODE_25_length_92668_cov_37.8533_ID_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1980 28 100.0 32 ............................ AGTCCGGAAAATGCGTCCAGCTCCGGACTGGT 1920 28 100.0 32 ............................ GCCAGTGCCACCGTCGCCGCCACCATCACCAC 1860 28 100.0 32 ............................ TGCTCAAGGTCACTACCGATATCGTCGAGGCC 1800 28 100.0 32 ............................ GGCAAGGCTGGGGAACCGCCCTCAAGCCCGCA 1740 28 100.0 32 ............................ ATGCGTGCCGCGGCTGAAATCATTGCGCGAGG 1680 28 100.0 32 ............................ TGAACGGTTTGAAGTTTCAACGGCATGCCGTC 1620 28 100.0 32 ............................ AGATTCGCACTCGGGAGGCGGAGGCTTGCACA 1560 28 100.0 32 ............................ AGTAGGTCGCGTTCGGCGGCGAGGCGTTGAGC 1500 28 100.0 32 ............................ AAGCTGGCGCCGATGACGGCTACTGCCGCCAC 1440 28 100.0 32 ............................ ACCGTCATGCTCTGGCGCATCGATGCCGGCGA 1380 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 1320 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 1260 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : GCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-617 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXT01000038.1 Pseudomonas aeruginosa strain ENV-569 PA4_A4_NODE_29_length_76240_cov_43.4168_ID_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ AGGGGGTGCCGCACATTCGGGTACTTGGCGAG 110 28 100.0 32 ............................ TACGATCTTGTTTGCCGTCCAGGGTGCAACCC 170 28 100.0 32 ............................ GGGAAGAACTGGCGCACCAGCTGCGCGACGCC 230 28 100.0 32 ............................ AGAACCGAATAGCCATGAGGCTGGCCAGAGGA 290 28 100.0 32 ............................ TTGTGGAACTGTGGTATCGCCGCTGGGTGCAG 350 28 100.0 32 ............................ AAGCAAGGACGTGCAGCATCTCATCGACGCTG 410 28 100.0 32 ............................ AATCTCACACCGAACCCGTCGGCAACTACGTT 470 28 100.0 32 ............................ AGCCGCGGCTGGTGGGACGGGTCCAGGTCCAG 530 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 590 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTAG # Right flank : ATCGCAAGCGATATCGACCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATATCCCGGATACGCGGCGGATAACCGCAAGCGGTTATCCGCCCTACGGAACCGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGCAGTCATGCTCACTCGCCAAGTGGTGGGGCGGCGAACCCGCCCCGTCAGGTGGCCGAGCGGAATCGTTGCGCAGGGGGACGAGCGGCAGGAAGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGTGCCACCGGGAGCAACGATGTAGCGAGGGCACCCCAGTCGCGCAGCGGCTGGGGCCGGATGCAGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGACGAAACAAGAAGTCGAGGCAGGTACAGCAACCAGCTAGACCACCAAATCTGAAGCCCGCTCAGGCTCTAAGCGACATCCTCCCCCAAGTTGCCAACTGCCGTGTAGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //