Array 1 982024-983516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033255.2 Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 982024 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 982085 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 982146 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 982207 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 982268 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 982329 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 982390 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 982451 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 982512 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 982573 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 982634 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 982695 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 982756 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 982817 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 982878 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 982939 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 983001 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 983062 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 983123 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 983184 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 983245 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 983306 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 983367 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 983428 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 983489 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 999648-1001124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033255.2 Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 999648 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 999709 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 999770 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 999831 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 999892 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 999953 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1000014 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1000076 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1000137 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1000198 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1000259 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1000320 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1000381 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1000443 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1000546 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1000607 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1000668 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1000729 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1000790 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1000851 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000912 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000973 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1001034 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1001095 29 96.6 0 A............................ | A [1001121] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //