Array 1 97277-98232 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXDJ01000006.1 Massilibacteroides vaginae strain MV12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 97277 46 100.0 29 .............................................. GGGTAGTTTAGGGAAGCCGTGACTTACCA 97352 46 100.0 30 .............................................. CAACTGCGGTTCGGAAATTTACATATAGGT 97428 46 100.0 30 .............................................. CAACTGCGGTTCGGAAATTTACATATAGGT 97504 46 100.0 29 .............................................. CAACTTCCGCTTTTTTAATAGCGTCAGAA 97579 46 100.0 30 .............................................. AATTGACGTATCGCAAGGTACGGGGGCGTG 97655 46 100.0 30 .............................................. AAGCGGTATTCAGGGAGTGGTTGGAGTATC 97731 46 100.0 29 .............................................. AGGAACACAGCAGTTATATTTTAACAGTA 97806 46 100.0 31 .............................................. GCGTATACCCTCCTTGGAAAAGGCGCTCACG 97883 46 100.0 30 .............................................. TTCGGAACAGTATCTGAACCTATAAATTCA 97959 46 100.0 30 .............................................. TCGAAGTTATGATTATATCCTTGCGGCTAA 98035 46 100.0 29 .............................................. GCACTCCAATCAAGTACGATGAGGCAACT 98110 46 100.0 30 .............................................. GACTACCGTATGAAGGACCAAGCCGTGAAG 98186 45 91.3 0 ..................................G.A....-.G.. | A,C [98222,98225] ========== ====== ====== ====== ============================================== =============================== ================== 13 46 99.3 30 GTTGTGATTTGCTTTCAAAATTGTACCTTAGTTCATTGATTACAGT # Left flank : ACTTTATATCAGATGTTTGGGACGAAGAGAATGAGATGCATCATACACTTGCTCATTTAGCTGTTGAAAGTGAAATTTGGAACTACATATATTTAAAAGATCTGTACGTGGAACGAATTGGGAATACAGATGAAATGCAACTTATTTTACACTGTGATTGCGAATGGGATGATGAACATGGAGTTGATCTGGCATACAACAAAGAAGGAAAACTTATTGACTTAGAAGCATAAAATTAAGACATAAACTAATATCGAGCTTGACGTTGATCGAGTAAATAATCCGGAGCATCCGGATTATCAAACGGTAAAGTTTCAATCAATAGTATGTAATTCCCGTATTGAATGATATACGTGCGCAGTCATACCCCTAACGATGACACAGACTACTCGTAAGAAAAGCCAGAATTACACCCAAACAACTATATAAAAGAATCAAATGTAAACAAAACGGAGCACACCGAATGTTAACGAAACAGTGGTAACCTAAACAGTGGATGC # Right flank : TGTCCCCCGTATTGATAGCAAACGATTTTCAGTTATAGAGAAGTAACTTTCAAAAACTACGAAAACATTCGGAGTCGTTTCAGATTTTCTTGGATTTTTCTTTGGAGTTTTTTTGCATCCACTTGTGTGGTAACAGTTCTGCCAAATCTTTCGTATAATCGGTATCGTAGTCATGGATGTGACTCAATACATAGAGCATCCAGTCCCGGAAGTTAGCATCAACCGCTTTACAACAGCCCAGTAGAGAGTACAGCACTGCGGCATCTTCCGCCGCATCGTGATTTCCACAAAAGAGATAGTTCTTTCGCCCCAAAGCCAGGGGACGGATGCTGTTTTCGGCCAGATTATTATCCATGCGATATCGGCCGTCCAGATGATAACGGGTCAGACGGTGATAAATCCCGTAAGTGTATTTGATCGCTTTCCCAATCCGACCTTTGGGCAAGACTTTAGGGTATTCATTTACCAACCATTTCTCAAAGACCACCAAGATAGGATAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAAATTGTACCTTAGTTCATTGATTACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 102967-100875 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXDJ01000006.1 Massilibacteroides vaginae strain MV12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 102966 46 100.0 29 .............................................. TGAAAGCCCTTTACCTTCTACAACGTCAA 102891 46 100.0 30 .............................................. TATAAACGTATCCATCATCTTCTATCACAT 102815 46 100.0 30 .............................................. TGAAGTATTCTGTTGATAAAAAGTACTCAA 102739 46 100.0 30 .............................................. TCTATCCATCCAATATGTTAATTGATAGCG 102663 46 100.0 30 .............................................. ATACACAACCGGCATCACGACATTATCCTT 102587 46 100.0 30 .............................................. TGGCAGACTTAAGAGAATCAGGCGGTATCG 102511 46 100.0 30 .............................................. GCCATCCCACCAATAATCAGGAACGTCCGT 102435 46 100.0 30 .............................................. AGCAACGGAATGATAGTTGTACCCCTCATA 102359 46 100.0 30 .............................................. CTCCCTGAACCTTGAAAAAAAATGCGGAGG 102283 46 100.0 30 .............................................. TATCCCCGTTAATAGCGGACAGCATAAGTT 102207 46 100.0 29 .............................................. ATATCACGGAAAAAGGAAATGGCTGGTTT 102132 46 100.0 30 .............................................. TCTTGTTGACGTGCTTCATTGCCGATTTCC 102056 46 100.0 29 .............................................. TTCCTTGCGGACATACCAATAGCTTAGGC 101981 46 100.0 30 .............................................. CCGCCGTACGCCTTACGATTCGCTAAAAGA 101905 46 100.0 30 .............................................. CTGTTTCTTCGTGGTTTATGTAAAAGCCCA 101829 46 100.0 30 .............................................. CTATCAGGTACAATGAGAATGACAGATCGG 101753 46 100.0 30 .............................................. TATTATCTTTCTTGCCAACAATGTCAATAG 101677 46 100.0 30 .............................................. CCGCCGTACGCCTTACGATTCGCTAAAAGA 101601 46 100.0 30 .............................................. CTGTTTCTTCGTGGTTTATGTAAAAGCCCA 101525 46 100.0 30 .............................................. CTATCAGGTACAATGAGAATGACAGATCGG 101449 46 100.0 30 .............................................. GGAATCCATATCTGTTAGTAAATCGTGGAA 101373 46 100.0 29 .............................................. TTGTAGCTGAAATGTTCGGCTTTGAACCT 101298 46 100.0 30 .............................................. CTATCAGGTACAATGAGAATGACAGATCGG 101222 46 100.0 29 .............................................. TTGTAGCTGAAATGTTCGGCTTTGAACCT 101147 46 100.0 30 .............................................. AAATGGATGTGCCTTTGGAATTTAAGGACA 101071 46 100.0 29 .............................................. AACTTGGTTATACAATCATTATAATAAGC 100996 46 100.0 30 .............................................. TTTAAGAGAACGGTATGGTAAGCCTATTCG 100920 46 97.8 0 ...............T.............................. | ========== ====== ====== ====== ============================================== ============================== ================== 28 46 99.9 30 ACTGTAATCAATGAACTAAGGTACAATTTTGAAAGCAAATCACAAC # Left flank : ATGTTTTGAAGGTAAATTACGCCGGATAAAGTACCCTGAATTGTTATAAAGTATGAGACAGAGTCGGTTTAATCAATATCGTATTATGTGGGTTATAGTATTATTTGATCTACCTACTGAAACTAAAAAGGATAGAAAAGCTTATTCGGTATTTAGAAATAAACTACAGAAAGACGGTTTTACTATGTTTCAGTTTTCTACTTATATACGCCATTGCATGAGCGTAGAAAATGCTAATGTACATATAAAGCGTGTAAAGAAATTTTTACCAGAAAAGGGGCATGTTGGAATTTTATGTATAACCGACAAGCAGTTTGGTATGATGGAGCTATTTTATGGAAAAAGTCCTGAATTTAAAGATACCGGAGCCCAGCAACTTGAATTATTTTAGAAACCCCAAATCTTAACACGTCTCAAGATTTAAGGTTTCTAAATAATAAAAAATCAAATGCAAACAACCTTTGTAATACGTTGATATATACGTTATTACTGTGTGGTAT # Right flank : ACGTTGTTACGGATTATATTACGTGTGCGGACTGTAATCAATGAACTAAGGTAAGCATTCGGCGTCCTCCGTCTTTTTCTTAGCTTTACTTGGTTCTATCTTTGCCCAAAAAAGATTATGTGGAATCTCAAAGAATTTGAAGTTGTCTATTCGCATTATAAGTCCAGCGGTCTCCGTGTCAAAGACTTTTGTCATAACGAGTGCATTTCTTTATCCCGTTTTTTCTATTGGCAGAAGAAGCTGAAGTCCTATGGCAGAGAATTGCCTTCCCCTTCCGGTTTCGTTCCGTTGATGTTGAATTCTTCAGGTTCTCCGGCAAAGAGTTCTTCTGATTATTCGGATGTTTCATATCATCAATCAAAAACCGAGTCTGTTTGCGAGGTGGTCTATCCTAATGGAATAAAACTCCGTTTACCTTTAGATACGGATATCCGACAGTTGGAACAGCTTATCCTCTTATTTCGTTAAGCCATGTTTAATCTGAATGAATCCATCCGCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGTAATCAATGAACTAAGGTACAATTTTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //