Array 1 174673-175283 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000002.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 174673 30 100.0 36 .............................. ACCTCCTCGTTTATCAGAATTTCACCCATAAGCTCA 174739 30 100.0 38 .............................. GTGCCAGGAATAATATAAGCTGGGTCTTTACAAATCAT 174807 30 100.0 38 .............................. GTGCCAGGAATAATATAAGCTGGGTCTTTACAAATCAT 174875 30 100.0 38 .............................. GTGCCAGGAATAATATAAGCTGGGTCTTTACAAATCAT 174943 30 100.0 38 .............................. TAAATATCATCCCCTTTGATGATGTATATGAAGCCTTG 175011 30 100.0 37 .............................. AATTTGTTGGTACAAGGGGAGTGCCACCTAACCTTGA 175078 30 96.7 36 .....................A........ AAATAAAAACCCTTGGTATTTTATTAATTTTATAAT 175144 30 100.0 38 .............................. ATATGAATGCTTGTCATTGTCCTGCACCTTCTTTTGTA 175212 30 90.0 11 ...........................GGG CGGGGTGTGGA Deletion [175253] 175253 30 83.3 0 ...............G.C.........GGA | C [175264] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 97.0 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TGGAAAATACTTAACATAGTTTTTCCCAATCAATATCCCACTTTTTAAAAGCCAATATCCGTTTTTGTTGTTTTGAATCAAGCTATTTAATAGCCTGCTATAAAGCATCATGTAACTCATCTTTATCATCCACACATACAAAAGGTTTTATATTCTTTATAATTCTATTAGGTTTTTAAGTCAAGCACATTTACAGTGCTTTTACTACTCATAAATATGCAGAGTTTTAGAATTTAATTGCATAAATTATCATTTTGACTAAAAGTCATATCCGTCGACCTCAGGTGCAAATTTTTAAGAAGCTTATTTGTATTCGATTTCAAGTTTGCAGGATGTGGGTTTGAATGTATTTCTGGCAGCAACTGGATAGACGAAAAGGCTTGAAAGGCTTTTCCTATTTGATGTAGCTGGGTTTGTGTTGATATTGAGGTGATGTATTAATATAAAAACATTGACAGTGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTCAACCT # Right flank : AAGGAAGAAAAGAATCTCTCCTTTGGGGATGGTGAAAAAAAGGAATTTGTAGCCTCTCTGCTTGGAACAGAAAGCAAAGGGGTGTTGTGGTCTTTTTAAACAGTGATTAAAAGTTGAAAATCTATTGAAAAGCGGAATGTAATTAAAAATAGAAACAAAGTAAATATATGGTAGGGCGAAAAGGTTGACGCACGTCCTAAGGTTTTTTATAAAATTAAGATATATTTGATTTTTCGCAAGAGGGTGAAGATATCAATTGTTGGTCCAAAACGCTAAAAGCGAAAATCCTATTAAATTTAATGTAGTAGAGAAATTTGTAAGCATCGAAGGGGAAGGTATCAGAAGCGGATATCCTGCTGTGTTTGTGCGGTTTGCAGGATGCAACCTTAGCTGTTCTTGGTGCGACACAAAGTATGCAACTGAAAATCCAAAATATGAGCAAATTGATATTGATACTCTTTTGAGCTTTATAGCTTCAACCGGCATCAAAAGAGTTACTC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 236757-236532 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000002.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 236756 29 100.0 36 ............................. AAATCTCTGCTTATTTTTTTTATAATTGCTCCTTTT 236691 29 100.0 37 ............................. GCGTAGCCTACCCGTTGGGGATTGAAAAAATAAAAAA 236625 29 96.6 37 ..............G.............. TTTTGAACCCGAGAAAGTTATCCCAGTAGTCAAGTCC 236559 28 72.4 0 ...................A-..TCCCTG | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 92.2 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTTGACGCAGCTACAGAACTTATATTCATTGAAATGTTTAATATTTCATCTTCAAGTCTTTTAGTTCTTTTTGCGTTATCAGAGATAAATTGAAATCTTTCAGCAAATGTTTTTTTACTGCACACAGGATTTTTACAAAAGAATTTTCTATTCTTGAGAACTATAACAACTTTTTTATCTTGTATTGGAAGATCTTGAAAACTTCTCGAATAGTAAGAATGTATTTTATTAGAACTTTGATTGCAATAAGGACACGTAGCTTGTGAATTTTTAGATTTAACATAGATGTAAATTGTATCATCAATTATTTCGTATTTCTCCATGACAAGATTATTATCTAACAGGTTTATAATTGACTCCATTGTATTGATTTCTCCTTTGATCTAATAGTCCTTTCATTATAGCCGAAAAATAAAATTTATTCAACTGACTTCGGAAAGAACCGATTTTATTTTATCATTAACAATTGCAAGTATCTTATGAGCAATCGGCTTCAAATG # Right flank : GATGCTTTTGAACGTCTCAGACCCGTCAAGCCGCACCGTATTAGATGACAAAAGGACTTTCAAACAACTTTCAAGGGATATGCTCAGAACAACAAAAACAGATGGGTTTGTATTTTACTGTGCGCTTTTTGAAGACCGAAAGCTTGGTGATGTTCTGCCAGGAAACAGCAGCTTTGAAGTTAAAAAATACACCTGGCAGACTTGGGAGAATGTTGAGTATCTCGAAAGACTAAAAGAGAGTTATAAATACATTCAAGAATTTTTCGCAACAATTGAATAGATTGATGCGTTTATAATATTGTAAAAATAAAATGTCAAATTGATACTGTTGTATCAGTAATAGTATTGTGATATCATAGTAAGAAACAAAAGAATTTACAGCAACATTTAGCACAATCAGGTCGAATTTTGTCGAAATTAAGAGAAAGTTGTCAAAAAAGTGAAAGGAGTGGAGATTTCAAGTGGTCGTATTGATTGAAGTTGCTGGTGTGTTAATTTCC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 52-1000 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000037.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00037.37_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 52 29 100.0 36 ............................. TTTAGGTGGTGGTTTATGATGGCAAAGTATCTTGCA 117 29 100.0 35 ............................. CAAGTATGGAGATATAAGAGTAAATATTTGGACAA 181 29 100.0 38 ............................. CAGTGGACTTTCAGTGGCATTGTGACGAAGCTAAAAAC 248 29 100.0 38 ............................. CAGGAAGGCATGATTTGTCACAAGGGTGTAATTTTCGC 315 29 100.0 36 ............................. AGAGTATGATTTAAAACCTATTCAGTTATATAAACA 380 29 100.0 37 ............................. AGATAAACAATCCACGAGACCCGTGGATTTTTGATGA 446 29 100.0 37 ............................. CCATTTTCATAATCCCACCTTCCAATCATACAAATAT 512 29 100.0 36 ............................. GGGCTGGTTCCAATCATCTGGTTTGACTAACTCAGC 577 29 100.0 35 ............................. TCGAGTATGAAACTAAATATTCAAAAATCGAAAAG 641 29 100.0 37 ............................. ACAATTCGTTTGTTTGCATGTTTACAGCTGCTGCAAG 707 29 100.0 37 ............................. GTGTAAAAATCGTATACGCAATTATAAGTGCAACTGC 773 29 100.0 36 ............................. GTTACAGAAGTTTTTTGTTGACAACAAGATAAAAGA 838 29 100.0 38 ............................. TGCGGATATCGAGGACATGGTAATATAGAAATACTTTC 905 29 100.0 38 ............................. ATAGAAATTGTCGCCAGGGCAATGACCGATAGCCTGCA 972 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 100.0 37 GTTTACATCCCTCATAGTTCAGATAAAAC # Left flank : AGTTAGGAAAGAACCGAAAAAGTATTGACAATAACAGTCGATACTGCAACGG # Right flank : TAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 169-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000008.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 168 30 100.0 33 .............................. TATGTCGTTCCAAACGCTCTTCCAATCGCCCTT 105 30 100.0 38 .............................. ATTCGCTAAAACCTTGAAATATCAAACTTTTCAATATA 37 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GGTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : ATCTTTGTCATAGTAACATACGACATCAATGAAAAGAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTTTTTGAAGGAGAGATTACACTTGGAAAGCTTGAAAAGTGCAAACGAGAACTTTTATCGGTAATAGAAAAAGATGAAGATTCGGTCTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTGGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATAAAGTTAGAGATGAACCTGTATTTCCGAACAAAACCATTCTGCAGCGAGGCCTATAACTAATTTAAAGTTTCTGCCTTCTCTTCCTACAAGGCTTTAAAAGGTATTTACCAACTCCTTACAAAACCCAACCACCCCCTCGCTGCAATTTATTTTTGTTGAGAAGATTTTGCTAATGGGTTATAATAAAGATATAGCATAGAAAAGAGGATATTTTTTATTAATG # Right flank : CATATATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 47037-47429 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000008.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 47037 27 96.3 39 ...............G........... AACACCTCGTCCAAAACTTCTGGCAATTCACTCTCGGCG 47103 27 100.0 39 ........................... AATTGCGATAGGAGGCGTTGACCTGTCAAGCACTACAGA 47169 27 100.0 39 ........................... AACGGCACTATAAACAGTGCCACTTTCCACCAATTCATT 47235 27 96.3 11 ...........C............... GGAGGGAGAGG Deletion [47273] 47273 27 81.5 39 AG..A.........AG........... AAGCCATTCTGATTTTGCTTTAGGTGTCTTAATAGGTAT 47339 27 81.5 36 ...C.......C.T......AA..... AACCCGCATAAGGTGAGATACTTGTCATAAACTCCA 47402 27 88.9 0 .........A.C.......T....... | C [47413] ========== ====== ====== ====== =========================== ======================================= ================== 7 27 92.1 34 GTTTGTAGCCTTCCCTTTGGGGATTGA # Left flank : ATTCTCTCAAACAAAAAGCAAGTAAAGTAAATGTGAAAAATAAAACCAAGGAGTATTATGTTATATTTAGTAAATCTGGATTTACAGAGAGATTTTTGGATTTTGCAAATGAAATGAAAAATCTAATACTTATTAATTTCCCAAAATAAGCTAAATTGTAAACAAGCAATGCAACACCATCAATATAATAATAACAATTTAAAAATTATGCGAAGATAAATTATGATAAATGTTTTCTATTTCTATTTTATGCTATTTTTGTATCGCTATTATATTACAAATCAATGTGTGTACTTAGAATGAACAGTTACAGCCAAATCTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGCATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTTTCAAACTATCTACGG # Right flank : AAAAGAGAAGAGGGTAAGCCATCTCTTGGGAACTGTATTTAGCAAAGTATTTTTTTGTTTTTTTAGTGTGGTATAATAAAAGTGTACAGAAAAATATACAACCTGAGAAAAAGGAGAAAAAACTGTGTGCGAGAAATTACCACCAAAAGAGCACGATACAACGTTCAAGTTTTTGTTTGCAGGCAAAGAGGAAATACTTTTGCTGGTAAAAGACATACTGCACTATACATGGGCAGACAGCATTGAAGAAGACACAATTGAGCTTGTCAAGACAAACTATGTCACCCAGCAGTTTTCGCAGGTTGAAGCTGACGTTGTAGCAAAAGCAAAACTAAAGGACAAAGAAGTATATTTTTATATCCTGATTGAGAACCAATCGAAGGTAAAAAAAGAAATGCAACAAAAGATTTTAAAATACATGATAAGTCTATGGGCAGAAGAAATAAGAAAAGGGGTACAAATCCTGCCGGCAATTATACCGATAGTTGTGTACAACGGAA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 65198-66470 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000008.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 65198 30 100.0 36 .............................. ATAAGCATGGTTTCAACATAACGTATGCTAACTGCA 65264 30 100.0 39 .............................. CCTCTTGTTTTGGTTTAATGCTTCACAACTCCACACTTA 65333 30 100.0 37 .............................. AGAAGAACAAGGAAAGGGGGTATTACGATGACGGTGT 65400 30 100.0 37 .............................. AGAAGAACAAGGAAAGGGGGTATTACGATGACGGTGT 65467 30 100.0 37 .............................. TTTTTGTCAATTATCCTTGCCATCCTATCAATTTCGA 65534 30 100.0 38 .............................. GATGCTTATCGCTATGGGATTTAATGCAGAAGAGGCAA 65602 30 100.0 36 .............................. GCTAATAAGACCTCACTTGCTCCAAGCCTTCTAAGA 65668 30 100.0 37 .............................. GGGTATGCAACGTTAGGTGTTACAGTAGAGTATGGAG 65735 30 100.0 36 .............................. TCAAATCCCAATGCGTTGGATTACTCCCTTCTACAT 65801 30 100.0 39 .............................. GTCTTTTCAGATATAATGGGCTTGTCTGATATTGTTAAG 65870 30 100.0 36 .............................. ACAGAATAGAGGGTGATTGATAATGGAATTTTACCT 65936 30 100.0 35 .............................. ATTTGCTTTTTGTATTCTCGATTTACATAGCAAGC 66001 30 100.0 40 .............................. GCTTCTTCATAAGTGAATTCTTCCCTAAGATTTTCGGTTT 66071 30 93.3 39 ...........C......A........... GCTAACTGCTTATCTCTCTCTTGAAGCTGCGCTTCTAAT 66140 30 96.7 36 ...........C.................. AGTTTCACCAGGAATCCAAAAGGTGCAATGGCATCT 66206 30 96.7 37 ...........G.................. CCATCCAGAATGGCTGGGATACGCTCGCCGAGTTCCA 66273 30 100.0 37 .............................. TGGTGGATATTGACAAGATAACAAGAATTGAACCTTA 66340 30 83.3 7 A..............G...........GGA GGGAGGG Deletion [66377] 66377 30 93.3 33 .G.............G.............. CCGCATAAGGTGAGAGACTTGTCATAAACTACA 66440 30 80.0 0 ....A......CTT.......A.......G | G [66465] ========== ====== ====== ====== ============================== ======================================== ================== 20 30 97.2 35 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : CAACAAAATATATTTGAAGAAAAGATTTACAGTCAAAAAACCTTATCTTAGTTCGAGCAGTTTTTTTCGATTATATAATAAAATACACTCAGTTTTGTAAACTGCAAAGTTCAAAAAATATGCGAAGTTGAAATTGCTATTTTCCAAGCAATAGCGATTCGATTTGCTGAGATCTGGAATATTTGTGGCAAGGAAAAGGGCAGCGCTGAAATTTTATTCATTGTTTTTGAATATTTTGCGTATTTTTATTAATTTTGACCAAAAGTCATATCCGTCGACCTCAGGTGCAAAATTTTAAGAAGCTGATTTGTATTCGGTTTCATGCATGTGGACTGTAGGTTTGAATGGATTTCTGGCAGCAGCTGGATAGACGGAAAGGTTTGAAAGGCTTCTTTTCTTTTATGCAACTGGGTTTGTGTTGATTTTGAGGGGATGTATTAAAATAAAAACATTGACAGGGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTCAACCT # Right flank : GAAAAGAGGATAAGCCACCTCTGGGGAATCTAAATAAGTAAGGTTTCTTTTTTTTTATAGTTAGTATGATAGGATTGCAAAAAGGGTTAAACAGAAGAGAGTGGAAGCTATGGGTGAGTTTATATTAAATGTTGCAAGACTTTTGGATGAGGCAAAGACAAGAGATTTTATGGCAGGTAAACTTGAAGGGAAGATTGAAGGAAAACTTGAAGGAAAACTTGAAGCAACAATCGAGTTTGCGAAAAGATTAATACAAAAGGGTTTTAGCGATGAAGAGGTTGCAGAACTTACAGAATTGGAGATTGAAAAAGTTAAAGAGTTGAGAAAATCCATGGTAAATTGAGATGGTTTAAACATAAAATAGTTAGGGGGTTGTCCAAAACGATAGTTGGATTGGTCAAAAAACATTTCTTTGTGTTATTTTCGTAGGTTTGTACCCTTCCCTTTGGGGATTGAAACATTTAAATTTTCTTCTCGCACACATTCGCATAAAAATTGAC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 81702-82613 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000008.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 81702 30 100.0 36 .............................. TTTTTAAAAGTTTCGAAAGGGGGGAATAGAACCAAG 81768 30 100.0 36 .............................. CCAGCAAGGCACACACCGGCAAATAACCGCTATCGA 81834 30 100.0 36 .............................. TCAAACAAAAAAGCAGTGTTTTTGTACACTGCTTTC 81900 30 100.0 40 .............................. CTTTGCATTAACAAATCTAATACACCCTTGAAAAAGTCCA 81970 30 100.0 38 .............................. ACAAAGAAATAATAGAGAAAAGACAAGGTTCTATAAAA 82038 30 100.0 36 .............................. ACAAAAGCTTTACAAACAACAAAACAAAGGGAAAAT 82104 30 100.0 37 .............................. TCAACCGTTGCAAAAGTTACACCTGCCGCCGCCATAA 82171 30 100.0 37 .............................. AGAGTCAATTTTGTTTTTTAGAAGCTTATCTAAATTG 82238 30 96.7 36 ...........T.................. GTATCCATATCAATAAAATCAATGTTTTTCAATTTT 82304 30 96.7 37 .........T.................... CAATAGTATACACACAAGTCCACCAACCCAAGAAGGA 82371 30 100.0 36 .............................. AGTGGTTATAAGGGATTCATTGACATAAACTGTATC 82437 30 90.0 8 ...........................GGT GGGGAGGG Deletion [82475] 82475 27 80.0 12 ..............TC.....A.....--- GGATGGAGGAGG Deletion [82502] 82514 30 90.0 39 ...........T..A.....A......... TGTTCGGAGATGGGATAAATTTTGATAGTGGTACAAAAG 82583 30 86.7 0 .........T.T.........A.......G | G [82610] ========== ====== ====== ====== ============================== ======================================== ================== 15 30 96.0 33 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTCAATATTACCACTTCCTCTCATAAAACTTTAACTCAATAGGTGGGTAGCAAGCAAAGACTCTTTTTATATGATACAATTGTTAAGCAAAATTTTAAAGTTCAAAAATCATGCGAGGCTGCTTGTTTATTAATAAGTATTTGTATTCAGTTTTATAACTTCCAGGTTAGAAAATTGATTTTGGAGACATGTACTATACATGCTTTTGTAATATTATTCATTATTACTGAGGTACTTATGTATTGATATGCATTTTGACTAAAAGTCATATCCGTCGACCTCAGGTGCAAAATTTTTTTAAGCTGATTTGTATTCGGTTTCATGTATGTGGGATGTGGGTTTGAACGGATTTCTGGCAGTTGCTGGATAGACGGAAGGCTTTAAAAGGCTTCTTTTCTTTGATGCAACTGGGTTTGTGTTGATTTTGAGGGGATGTATTAAAATAAAAACATTGACAGAGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTCAACCT # Right flank : GAGAGATTGAAACTAAATTCTAATGCGCATATATAATAAAAAAGGCAGGAAAGAGGAGCAATGAATATGCTTTTTTCCTGCCTACCTTTATATTTGGTTTTCTTCACTAAATCTAATCGTGACGTTAAGCATCGCAATCCTTTTTGAAAAGTACCTTTTATTAAGAATGACAAACCAAGTATAATAGCAAATACTTTTTCGCCGCAAAAAAGACCATTTCAACATAATTGACGCACAAGCAAGGTTAAAAATTACGTAAAGCCAACTTCCAATTTGAAAATGGTCTTTTCTTCTTTTAACTTAATGTCTTCTATATATCCAAATCCAAGCGCATTTTTGAGCCTTAAACCTGCATCATAAACTGTTTCAACTATGTTTTCATCACCTTCAATTAATAAAAGCCTTTCTAAGAAAGAAAACTTATTCGTGAAAGATAACTGTCAACCTCACCATCTTTGCCTTGACGCAAAACTTCATCAGTTTCATTAGAAATTCTTTTG # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 86009-86580 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000008.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 86009 27 100.0 41 ........................... AACATATTAAACAGCGACGTTTTCTCGTTCTCGCTTGCAAT 86077 27 100.0 39 ........................... AACGCTTTCTGGATATAGTCCACGTAAAGCCAATGATAA 86143 27 100.0 38 ........................... AACAATTCAATACCAAGATTATGAATGGATTGATGAGG 86208 27 100.0 39 ........................... AACAAAATCTTGAGACTTTCAATCATTGCTTTTCCCCTC 86274 27 100.0 41 ........................... AACGTTGGAGTGCAGAAGAGGCAATTGCTTTTTTAAAGTGG 86342 27 100.0 12 ........................... GGTGGGGAAGGG Deletion [86381] 86381 27 88.9 41 ...........C...T.G......... AACGGAGAACAAGCACCATTCTCAATGCGACTTATTGTTTC 86449 27 92.6 39 ..............TT........... AACATTGCTGAAAAATTTTCTTTTCAGGCACCTCATCAT 86515 27 100.0 12 ........................... GAAAAGAAGAGA Deletion [86554] 86554 27 77.8 0 ....T..C....T..T.....A....T | ========== ====== ====== ====== =========================== ========================================= ================== 10 27 95.9 34 GTTTGTAGCCTTCCCGTTGGGGATTGA # Left flank : TACTACAAAATCGACAACTACAACAATTGTAAATACCTTCAAGCCATCAACAATTCTGAGCATCATATTAAAGCCCTGTGAAAACTGCTGAATCTTATCTTTTCATTCATTCACCTTCTATCTCTAAGATTTCTTAATTTAACTATATCGAAGCTAAAGTGCAAAAAAGCAAAAATTATGTTCAGAAGAACTCTGTAAATCATCCTCTTTGCATTTATTATAAATATAAACTGTTTTGAGAATTTATATTCACCTTGACCAAAAGTCACTTCCGTCGACCTACGGTGCAAAAATTTTGAGGTTTGTTTTGTATGCGGTTTCATTTAGGTGATGTACGGCTTTATTTGGAACGCTGCCAGCAGCTGGATAGACGGAAAGCAAACATCAAGTTTCATTGCTTGATTTTCTTCTTATGAGGTAACTTATCCACAGATGTTTCGATATAAAAACATTGACATAGGTGTATAATCTTGATATAATAATTTCAAGCACTTGAACAT # Right flank : TGAAGAAAGGAATTGCAAATCCTAAACTTCGCAAAAAATTTGACTTCAGCTTTTCTCTTTTTTGTCCTATCATCAAAATTAGAAAATCCCTTTTGTTAGAAGGGGGAAATAAAACATGTCTTATCTTCCAAAGAGTCCAAAGGAAGTTTATGAACAGATTTTACTTGAATACCAAGCCTATTCAGAGTTTAAAAAAAGAATAGAAGGAAAGTGTTACCTGCCACACGATCCTGAAAATGTCCTTTATCTGTACTGCAATTCCACTTTCAATGAAGAATATGAAGAAATGTTGAAAAGCAAACAAATTGAAAATTACGTTGAGCCCCAAACCGAAGAAGAGTGGGAATACTATGCCGAAGAAGATGAATATTGCAAAGAAGAATTCGAAAACGACTTTGAGTTTTTTGATGCAGACTATGAAATGTCAAGCGAAATGGATGATATAGTTGACGACCCTGATTTTTGGGATTCTTTTGATTATGAGTGGGGCGACTGATTTT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCGTTGGGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 95619-96155 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXO01000008.1 Caldicellulosiruptor acetigenus DSM 7040 H557DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 95619 30 100.0 38 .............................. AAATCTCAGCCATTTCTTTTTGTTTGAGTCCTTTTTCT 95687 30 100.0 36 .............................. TTAGGTGCTTTATAATATTCCAAAACTAAACCGCCA 95753 30 100.0 37 .............................. ACTAAATCTTTAAACCTTTCCCTGTGCAACTTCATCG 95820 30 100.0 38 .............................. TTCCTTCATACTGTTCATCATTGCCCCAGCTCTTTCAT 95888 30 100.0 36 .............................. ATGTAAACTGCTAATTCGCAGCTAAGAGGCTGTTTA 95954 30 100.0 38 .............................. AAAGGTAACTGGTCGTATTCAAGCAAGATATACGCTCT 96022 30 100.0 35 .............................. ATACATCTCAGATAGTAAATCTTCTAACAAATCAG 96087 30 86.7 9 ...........G...............GGT GTAGGTTGT Deletion [96126] 96126 30 73.3 0 ...C......ACTT.....T....C....A | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 95.6 34 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : ATCTCCCTATTAATTTTGAAAATCTTATATTTCGTATACCACACAGCCAGCTTAGCGACTTTTATGACCCGATTACAGGTTTTAAAACAAAGGGGGAAAGCTACCTGAGTTTTTAACACTTTTTGCTTTCTCCCTTGTCATACCTGTAGGTTTAGAGATTTTACCTTGTTTTATTCTCCTTGCAGCACTTTTAATATAGCTATTGTTGTAATATTATTCATAATCTTTGAAGAAATCGTGAATACCAATACATTTTGACCAAAAGTCATATCTGTCGACCTCAGGTGCAAAATTTTTTGAGTTTGGTTTGTATTCGGTTTCATACTTGTGGGCTGTAGGTTTGAATGGATTTCTGGCAGCAGCTGGATAGACGGAAAGGTTTGATAGGCTCCTTTTCTTTGATACACCTAAATTTGTTCCAGTTTTAATGGCATGTATTAAAATAAAAACATTGACAGCGGTGCATAAAGTTGATATAATAAAATCAAGCTTCCCAACCT # Right flank : AGAAAAGAGGGTAAGCCACCTCTGGGGAACTGTATTTGCAAAGTATTTTTTGTTTCTATAGTGTGGTATAATAAAAGTGTACAGAAAAATATACAACCTGAGAAAAAGGAGAAAAAACTGTGTGCGAGAAATTACCACCAAAAGAGCACGATACAACGTTCAAGTTTTTGTTTGCAGACAAAGAGGAGATACTTTTGCTTGTAAAAGACATACTGCACTACACATGGGCAGACAACATTGAAGAAGACACAATTGAGCTTGTCAAGACAAACTATGTAACTCAGCAGTTTTCGCAGGTTGAAGCTGACGTTGTAGCAAAAGCAAAACTAAAGGACAAAGAAGTATATTTTTATATCCTGATTGAGAACCAATCGAAGGTAAAAAAAGAAATGCAACAAAAGATTTTAAAATACATGATAAGTCTATGGGCAGAAGAAATAAGAAAAGGGGTACAAATCCTGCCGGCAATTATACCGATAGTTGTGTACAACGGAATAGGT # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //