Array 1 57199-56236 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWY02000022.1 Leptospira noguchii serovar Panama str. CZ214 ctg1134732786316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 57198 37 100.0 34 ..................................... GTTTTCTTGTTCACTTCGATGCCTCTCTTTTGTT 57127 37 100.0 34 ..................................... CATTTCGTTGACGTTGTCGATAGTTTAGTATATA 57056 37 100.0 34 ..................................... CGAAAGACGGCATTAATGATTTTTACAACTACAG 56985 37 100.0 36 ..................................... AGAATAAAGAAAGGCGATGTCCCGCAAGGTCATCTT 56912 37 100.0 34 ..................................... CTCAGTTGAAAAAAAGATTAGGACGAGACGGCAA 56841 37 100.0 36 ..................................... GTGCAAAACATCCAACCCTAACAACGGGTACGGTAT 56768 37 100.0 34 ..................................... TTTATGACAATCCAGTTCTTAGGAATCCGACCAA 56697 37 100.0 33 ..................................... TCAAGTTTGCCTGATAAAAACTTATTTCGGTCT 56627 37 100.0 34 ..................................... TTTTAAATAGTAGTTTTGGAAATTAATTAACCAA 56556 37 100.0 34 ..................................... ATATCGCCTCCTTGTTTTGGTTGCGGCTTAAGAA 56485 37 100.0 35 ..................................... CGGTAGTTTTGTTATATACCGCCTTCGGTTCGTAG 56413 37 100.0 35 ..................................... TTAAATGAGCGCTGACAAAAAAGAATTATCAATTC 56341 37 100.0 31 ..................................... GAAGGCTATAATTTTTCAGATGCTCAGCCTG 56273 37 83.8 0 .....GC....C....C......A...A......... | A [56248] ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 98.8 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : CGTTCAATTTTCGTAGTAGTTCCCACATTGGACTGTTTCGGAACAAGTTCTTAAAGAATAATAGAGTTGTTGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAAAAACCGATGGAAAATTAATTTTCAATAAATCTAATATTTTTAAAATAAACCTAATTTCAAAATTAGCAAAATCCAGAACACAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATTATTGACCCCGGAAAGACGATTATTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTTTGTTTGGCGATTGAACTGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATAATTTTGGATCCTATCAAGCCGCT # Right flank : GATTATTTATATAGTTTCCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTAAGTGGTAGTTCCCACAGATTTTGTCGCATTACGGACTTTTAAATATTCATTTTTTGTAATTAGAATTTGTATGTAATAGTTCCCACATTTTATTTTTACGAAAAAATCAGGTTTTATAAAGCAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTTTACCGGGTTTTTGGATATTTTGCGGTGATTTTACTTTTTATATTTTAATTCTGGGTAGCATTTTATTTGCATTTGCCCCCGTTTTCAGGAACAATTCAACACCAGCACACGTATAATTTAACTTCTTCTTTCAGAAAAGAGTAAAATCATCAAAATCCAATTCGATTTCCTGTTTAAAATTCTCTAAAAGTCTGCCTCAAGCCTAAAATGATCAAAATTTGATCATGGAAGATTTACAAATACCCAGATGTGGTGACGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 7996-7601 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWY02000014.1 Leptospira noguchii serovar Panama str. CZ214 ctg1134732786323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 7995 36 100.0 36 .................................... TTTTGGAGAATTGCTTTCTCCAGAAGTTCGAACTTA 7923 36 100.0 36 .................................... AGGCGTGGCGACCAGATTGTTCCGATAACGATATTA 7851 36 100.0 34 .................................... CAAATACTTCTTTCATTCTTTGCAGACAATATTG 7781 36 100.0 37 .................................... TATCTTTAGACAAAACCTGGGGTGGAATATTCTATCA 7708 36 97.2 36 .......................G............ CCAACAGGTTATTCAGTGCCAGCGGTGTTAAATAAA 7636 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 99.1 36 TTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : ATAAACCATAAATTCGGAAATACACAATCTATTAGAGCTTCTATATTTTTATAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAGAATAAAAAGATTTTTGAATGAAATTTAAGTTAAATTTCAAAATCAATCTTTTTAGTCACAGAAACCTAACAATCTGGAATCTAATTTTCTTGACTTTAAAAAGCAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATCAATGGCGGCCCTTTCGCGCTCCAGCAAGTAACCGCCATTTGTGGATTGGATGGGTTTGCTTAGCATTTATATAGCATGGTAAATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATAGATTAGGACCTTTATAGCCGCTA # Right flank : ATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAAGTAGTCCCTGAAAAAGTGTTCAAAAGAATTCCAAACTTAAAAGTTGAGAATTGGTTCTAACTTTTAAAGAGGGCGATTACGCCTAACTTCTGCTTCTCGCTGCGTTCGGAATTGCTAATGCGAGCCCGCACTCCAGGCGTTGCCACATTTGTTTTGTTGTTAGGTGAAAGTAGATTATCGTCTTACTTTAAATCATTAAATTCACAGGTAATAACTCTATGGGAAGTATAAAAAATTGGGCTACTGGCCAATTATCCATTGTTTCTGAATGTTTAAGTTATTATTTTGCCTTTATAGCGGTTTTTAATTTTTTAACTAAAAATTATAGAGACTTGTTTAATTTTGAAGACATATTTTTAACGTGAGCAGGGCGTAACGCGAAAGGGATCGATGCGGGGTCAATAAATTAAATCTAAAGACGATTGTTGTATTATGTTTCCTGTATGCAATTTATTGACCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 48953-48415 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWY02000021.1 Leptospira noguchii serovar Panama str. CZ214 ctg1134732786325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 48952 37 100.0 37 ..................................... ACAATTTAGTACTGCAAACGTATTCCCTTGCGTAAAA 48878 37 100.0 34 ..................................... AAAACCGATTTCCATCGTAACACCGTTTCCAGAA 48807 37 100.0 33 ..................................... TCGTTTTGATACGTCCGAAATTGGTAATTCTAC 48737 37 100.0 33 ..................................... TAAGAATCCATAAAATAAACGTAAAGGATCCGG 48667 37 100.0 35 ..................................... TAATGTGATTCGATTACTCATCTAAAAAGACAGTA 48595 37 100.0 35 ..................................... AGTTACATTTAAAACCAAAGAAGGAGCCGTAAATT 48523 37 100.0 35 ..................................... CTTAGCGATTCTGACGGCGAGATCGATCTCGAATT 48451 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 35 GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Left flank : ATTGTAACTAAAGACAATATATCGCATTATGCTTCTTTCATGCAATTTATTGACTGGAGTTAAAAACGGGTTCGAATTCGCCTGGTTTTTTTTCTCTGAATTCACAGGATTGATGTGTAAATTATTAGATTGGGTTATTTATTATGTAGTCATAACTTTATAAATGAGTTTTTAGATTGAATTTCTACTAAACTTTTAAATCAATTCTCTGAAAATTTATCCCCTAGACATCCAGTTACTTAGCCGTAAAACTAAAGAGTTTATAGTTTTATATTCTTGACTTTAAAAAGTGGACCATTTTATGATGAATCGCTTTTTGCGAACCTGTTTCTCCTGATAAATTGCGGCCCATTCGCGCTCAAGCGAATAACTACCGTTTGTCGATTGAACCGTTTCGCTTAACATTTATACAGTATGTTGTCAACAGGTTCGCGATAATTATGTCTAAAAAGTCTAATAAAGCTTTCCCTAATGCATCAATTAGGGCCTGTGGTACCGCT # Right flank : TTTGAGATGAGTTTCGTTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACTTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAAGATATAATTGATTACAAACTATTTTAAAAAACCCTAGAATAATCTACATTTTAAGTAAAGATAAAGTATTTTCGAGATGGCTTTTACTAGTTCCTACAAAATTAGATACTCATAAATGTTATGATAAAGTGTCGGTTAATGTGTTTTCGGTTAAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTCTGAGTAGTATTTCTAAAAATTCTGTTTTACCATTTAGCCCTCTGAACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 315674-316342 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWY02000021.1 Leptospira noguchii serovar Panama str. CZ214 ctg1134732786325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 315674 37 100.0 35 ..................................... CTTTATAAATCCCCCACAAACATCTATCCTCTTGC 315746 37 100.0 36 ..................................... AATAATTGCAAGATTCTTAATTTCAATTTGAAGATT 315819 37 100.0 34 ..................................... TCTTTTGGCTAGGGATATATGTATATCGTAACTC 315890 37 100.0 36 ..................................... CGTGAGTGGATCTCGATTTATGCGCCTCACTTTAAA 315963 37 100.0 34 ..................................... CATCATCGCGCCCATAGATACGGCCATCCGTTCT 316034 37 100.0 35 ..................................... TTGACAATCGTAAGAATATTTTTTTGTAAATTGTC 316106 37 94.6 34 .....................A.G............. AACGTAACAGACTCTGAGATCAAACGCTCCGCTT 316177 37 100.0 33 ..................................... ACGGAAAAAAAGAACTGAAATTAAAAACTTTGA 316247 37 86.5 24 .............................GA.C..CT GAGGAAATTCCTCAGTTGATTTTT Deletion [316308] 316308 35 81.1 0 ...C.........--G...........AA.C...... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 96.2 34 GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Left flank : GCAAAGAAAAAATATAGTTTTTCGCCTAACATCAGTTAATAAAAAGTAGTAGCTTCTCTATACACTTATAATAACTGCTAAAAACTATATTTCGAATTTTTGTATGTTGTTTCTCAGAATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTATATTTTTTATATAAAATTTAGTTTTCTATTAAATGTCAAGTTCAACTACAAGATTATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACAATGAAATGCTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCCCTTGTATTGATTCGTTGTTTGGCGATTTGACAGCTTTGCTTAGCATTTGTTCAGCATGCTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAGAGCTTTTTATAATACATAATTTTCAACCTTATTAAGCCGCT # Right flank : CTGAACGCGGATTTATATAACGTGAGTTCAGCGTAAAGAATTCATTTTTCTGAAAAAAGCTGTGATCTTAAACTTTCTGAATCAATTCCTAAAATGTGGGAACTCATACTGTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACCTCAGATCGCGATTTTACAAACAAATTCTAAAATTGTAGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGGATGGGCGATGGACTCTTTTTGTAATAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCACAATTTGCAGTAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCACAATTTGCAGTAGTTCCCACAGGTTAAGTCGTATAAAAGAGTTGTTGAAAAATCCATAATGGAAATGGAGATTAGGAATAATACTTCAATTTTCCATTTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 424172-423848 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWY02000021.1 Leptospira noguchii serovar Panama str. CZ214 ctg1134732786325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 424171 38 100.0 32 ...................................... TTTCGTCTGGACCTGCTTTTGTTAACAAGCTC 424101 38 100.0 35 ...................................... GATTTCGACAAATTCTACAGGCGGGGTTATTAATC 424028 38 100.0 34 ...................................... TACAAAACCTCGTCCGACGGAAGAATCGACGAAA 423956 38 97.4 33 .....................................T TGAAAGAGTATTTTGGTTTTCCGTTCTCATCTT 423885 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 99.5 34 ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAACA # Left flank : AAATCTTTCGTAGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGTTCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAACACTTTTTGCGAACCTGTTTTTCCCGATTGATTGCCGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGCATAAATTAGTATCTTTGTGGCCGCT # Right flank : ATTGTAATGCTAATCGCATCAGCTCTGCTTTTGATTTCTTTCTCTTATCAAAGAGCGGGTTGAAACGTCAAAAAAACGATTTATTAGAAAGAACTTTATTTTAGATTTTATAAATGCTTTCACTAAAAGTAGGATTTTAGGTAGTATATTATAAAATATAATTATATAACGTAAGTTAGACGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATATAAATCTATTGTTAAACTTTACAGTAAAATACAATTATGAGGCGCAGCTTGTGGGAACTTTATGTAAATTTTAATTTACTGTAAAGTTTTCAAAAATGTAGATTTGTTCTAAATCAAGTAAGTTGTGTTTTATCATATTTCCTGAATTGGAGATAACGTATTTTTGTAAATATAACGACAAACCTTGAATGATTCGATAAAATAGAAATCGCTTAGAAAC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 55925-56687 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWY02000003.1 Leptospira noguchii serovar Panama str. CZ214 ctg1134732786324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 55925 37 100.0 33 ..................................... AAATATTCAAAATCAAAAAACTCAAACAAAAAA 55995 37 100.0 36 ..................................... ATCTTCTTAAAGCTTTCGTAATATAGTATTGCATAC 56068 37 100.0 37 ..................................... TGTTTTAATCTTCGTACTAGTTCCAACTCTGGCCCAG 56142 37 100.0 35 ..................................... GCATAATGAACGGAAACATTCGTTTTTGTGTTGTT 56214 37 100.0 36 ..................................... TCTCTGTTCTGCGAATTGATTCGTTGCCTCTGTGTG 56287 37 100.0 37 ..................................... TCCGAATTTAAACGGACTTAGTCCGAACGAAGGCCGT 56361 37 100.0 36 ..................................... ATCTTTACATTTGCCAAGACTAGATGATGCCGAAGA 56434 37 100.0 36 ..................................... ATCTTTACATTTGCCAAGACTAGATGATGCCGAAGA 56507 37 100.0 35 ..................................... CCTGATTGTCTGGCAATACAAATGACATCCGTTTG 56579 37 100.0 35 ..................................... TTCATGGTGATAGGAAATCAAGACGCATCGAGCAG 56651 37 97.3 0 .......C............................. | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.8 36 GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : TAATATTGTTTTTGGGGTATTTGTAGGATTGTTCTCAAAACTAAAAACTTTGCGAATGTCTATTGGTTGATAGGACTGTTTGTTTTATTGAGTTTAGATTCAATTGTTTTCAAACTGGAAATGGCATTTCAAAATCTCTGAAAATTCGTACAACCCGAGAAACATTTGTTTAAAATTTTAATTTGAGACTGCTTCTAAAAAATTCTTTTGCTTCTTTTCAAAAAATTTTAGTTAGGTGAGAACTTTAATTAGCTTAAATCTATCCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACACTATTAAGCCGCT # Right flank : CGTTGTAGATGTCAGTTCCTGCGTATTGAACTACTGTTTCTTCTTCTTGTTTGAAGAACTACATAATAGAGTGTCTAAAATTCCGTTCCTGAAACTGGATTCCTTTCAAAATTTATAGTACTCTAATATATAGGATGAATACTATTTTAGTGATCGGATAGGCAAGAATGATAATTTTTAAGTTTTGTGGTAGTCCCTACAATTTTATGAAAATTGAATATCAAACTGTTGCAGGCTAAATGTATAAACTATGACTGATTTCCATTGAACAAAAGTTATTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTTTATTTTTACAGACTGAGGTCTCTTTTTCGGAGAATGACTTGGTTTTATAAGTTTTACTGTGAAAATTTAGTATTTGTGGTAGTTCCCACAAATTAAGTCACATTGTAAATATACAGATTTTAAAATACTCTTTTAATTCAATTTCTGTATCAGTTTCCCAAATCAAAAAATTTTACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //