Array 1 18434-19525 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QLRN01000036.1 Streptococcus iniae strain QMA0161 NODE_2_length_112111_cov_65.8707_ID_1079, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     18434	    36	 100.0	    30	....................................	AAGCGGAACAGATGACAATATATGATTTTT	
     18500	    36	 100.0	    30	....................................	GCTGAAAAGACTGCTGTACTCGTTGGAATA	
     18566	    36	 100.0	    30	....................................	TCCTTTTTGAGTAAAAGCTATTGTCTCATT	
     18632	    36	 100.0	    30	....................................	TATACGACTATAAACAGTTGCCAGCTTCAT	
     18698	    36	 100.0	    30	....................................	TATGGAAAATGTTGACTTCCACGGTAAATC	
     18764	    36	 100.0	    30	....................................	TAGATCCCCGCATTTTTGACGAAAAAGCTC	
     18830	    36	 100.0	    30	....................................	CGAAAGGTACTATAACCGATGAAGATATTA	
     18896	    36	 100.0	    30	....................................	ACAATTATTTTATGTCAGATATTGATGAAT	
     18962	    36	 100.0	    30	....................................	GTGTTCGCCGAATAAGTAGAATTAAGAAGC	
     19028	    36	  97.2	    30	..........................C.........	CCTGCAAAAGATTCATATGCGATTAGTTAT	
     19094	    36	 100.0	    30	....................................	CAAGTCTTGCAACAACAAGTATCCACTACA	
     19160	    36	 100.0	    30	....................................	ATATATATCAATGGAAATACCAAAACGTTT	
     19226	    36	 100.0	    30	....................................	TTAATTCCTTGGTTGTCAGTGTAATAGATA	
     19292	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT	
     19358	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA	
     19424	    36	 100.0	    30	....................................	TACAACAGTACCTATAAGTGTGGCTACACC	
     19490	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  98.4	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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