Array 1 16386-14967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021053.1 Zymomonas mobilis subsp. mobilis strain NRRL B-1960 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16385 28 100.0 33 ............................ AACAACACTGACCCCGCGGGCGATAATAGCGAT 16324 28 100.0 33 ............................ ATCATCACCCTTTTTATAGTCTTCATGGATGGA 16263 28 100.0 32 ............................ GCCGAATGACAAGCTTGCGATTTTTGATTGCA 16203 28 100.0 32 ............................ GACGAATTACACGCTTGCGATTTTTGATTGCA 16143 28 100.0 32 ............................ GTATCAGGTCATCAACATTCTTTGCCGAGAAA 16083 28 100.0 32 ............................ ATGATAGCGCGCCTCGGCATTGATGCAGATGA 16023 28 100.0 32 ............................ CATATCTCCGCGGCTTTCTCTTCGCCATTAGT 15963 28 100.0 32 ............................ TTTCCCGACTGAAAATATACATTCTCTAGCAA 15903 28 100.0 32 ............................ GCGTCAACAAGGAATTGAATAAAATGACTACT 15843 28 100.0 33 ............................ AGATCTGTTATTTTGTTATTTTTCAAAAATAAC 15782 28 100.0 33 ............................ TTAGATGTTCTCATCACGTGGTCAGTATCTCAC 15721 28 100.0 33 ............................ GCAAGCCATGACTTACCGTTTCCAACCTCCAAC 15660 28 100.0 32 ............................ GAATGAGTATTTAGCCATAATTCAATCCTTTC 15600 28 100.0 32 ............................ AATGGCAACTTCAGCACTAACGTCAGTTTTAG 15540 28 100.0 32 ............................ TTATTAAAAAAGGCGATACCGTTATCTTCAGT 15480 28 100.0 33 ............................ AAATTATGCTTTCGAGACAGCGACTAGAACCGG 15419 28 100.0 32 ............................ ACCAAGCGACGGTGTCCGGGTCTTTGGTCAGA 15359 28 100.0 32 ............................ TTGCGCGACTTGGCTCCCAAGGCCGACACCAA 15299 28 100.0 32 ............................ TAGAAAACATTACTCCTAGGTAATATTAAGAT 15239 28 100.0 33 ............................ TCTATAAAATAGAGTTTTGTCGCCCCGACTGGC 15178 28 100.0 33 ............................ TCTCTAAGCCCAATATCAGCCAAAGTCTTTGGC 15117 28 100.0 32 ............................ TAAGAAGCAACGCAGCAACATGAGGGTCTGGA 15057 28 100.0 32 ............................ TGTCCGGTTCTAGTCGCTGTCTCGAAAGCATA 14997 28 89.3 0 ............G.............TT | GTT [14973] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCGCGTGGTTTTGCATTAGACACCGCTGTATATTTTGAAGCATAGCCGGAATTGAGTTTAATTTTGGCCTGTTGCGGCTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGGAATAAGAGCCATTCAATGCTGCACATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGTAATTCTATCTTTTGCCTCTA # Right flank : TTATTGCATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTGGGGATTAGTCTTCTGCGACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCGAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACGATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1154817-1156349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021053.1 Zymomonas mobilis subsp. mobilis strain NRRL B-1960 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1154817 28 100.0 32 ............................ ATACGCCGAACGAATATTTAGACATGATTCAA 1154877 28 100.0 32 ............................ ATTCGATCATAAAGCTCCGGCGAGATACTAAG 1154937 28 100.0 33 ............................ CTATAAGCAGACAGGTCTTAACGTTGGTTTTGT 1154998 28 100.0 32 ............................ TAAGATTCCACCATGCCTTGGCTTTGTGTCGT 1155058 28 100.0 33 ............................ TCGTCGGGGTTTTCGCCAATCCATTTAGCGATA 1155119 28 100.0 33 ............................ AAAATCTATTCCGACAATCCAGCAAATTCAGCT 1155180 28 100.0 33 ............................ GAATTAGCGGGAAACATCGAAACCTATCACATT 1155241 28 100.0 33 ............................ ACCGTGGTCAGGGATAATCCGCCAGATGCGCTA 1155302 28 100.0 32 ............................ TGACCACGCTAGACTTAACGCGCGGATAGATT 1155362 28 100.0 32 ............................ TTGATACTGTCAATGATGGTAAGGGTTCTTAT 1155422 28 100.0 32 ............................ ATTCACGGAAAAGAACTGGAATTTGACCGAAC 1155482 28 100.0 32 ............................ GTTCCGAATGGCATGGTCTCTTACGGCATCAG 1155542 28 100.0 32 ............................ ACAGTCTTTGATCTGTCTTTGACTGATTTCTG 1155602 28 100.0 32 ............................ CATGAAAAATGGAGGTCATTGGCCTGCCTTTT 1155662 28 100.0 32 ............................ CCTGCCTTGGGCAGCTCTGGCCGGTAATCTCA 1155722 28 100.0 32 ............................ GATCAGCGGACTTATTGCGAGCCTCTTCAAAA 1155782 28 100.0 32 ............................ CTGTCGTATCTGCTCACTTGATCACAGAAGAG 1155842 28 100.0 32 ............................ GGATGCGGTAACTTAGCCCAGCTTGGCAATAT 1155902 28 100.0 33 ............................ GATACGCCGTCCTTTTTTGTGACAGCAATGTCT 1155963 28 100.0 32 ............................ GATCAGCGGACTTATTGCGAGCCTCTTCAAAA 1156023 28 100.0 32 ............................ ATTGCCTTCCATTTTTCCCACAAATCTTCTTC 1156083 28 100.0 32 ............................ ATTTGATACCGCCAGAAGGCGTTCGCACCAGT 1156143 28 100.0 32 ............................ TCGGCAATCGGGATGAGTTCGATGTCGCCCTT 1156203 28 96.4 32 .............C.............. TATACCAAACCACGGGAATGTGATCACAAGAG 1156263 28 96.4 32 .............C.............. ATCGGCGGCCTGCAATAATTCGGTGAACTCTT 1156323 27 85.7 0 .............C.......A.-C... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTCAAAAAGGCAGGGGTGCGTCTGGCTTATATCTTAAACCATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGACGCCGCCGCCAATAATAACGGATAATTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGCCCCTAATTTGCCCCTCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : ATTATCAAAACCGACGCCGATCATATCCCCGCAGGTAGTCTTCAACATAAAAGCATTTAAAAACAACTACTTAACCACCCACATATTACCCCCTTCAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGTTGAGAGCAAACGGCCTCACGCCGCCGATATCTTCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTCCCACTATCCCGATAATTCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCGCTATATTACGTCTTCACAGGCTGGCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1725189-1723947 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021053.1 Zymomonas mobilis subsp. mobilis strain NRRL B-1960 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 1725188 28 100.0 40 ............................ CGACAGACACCAACTTTTCATATTTTTGATTTCGTCGGGC 1725120 28 100.0 32 ............................ CAAGTCAATCCAACGCCGACGCTTGACAATCT 1725060 28 100.0 34 ............................ CCGATCAAGTCGCAAATGTCAGGCGCGATAATAT 1724998 28 100.0 32 ............................ AAATGAATATTTAGTCATGATTCAATCCTTTA 1724938 28 100.0 32 ............................ TTTGATAGTTATACGGAGCAGTCCCAATCCGG 1724878 28 100.0 32 ............................ ACGCTGGTTGATCTTAGATGTTCTCATCACGT 1724818 28 100.0 33 ............................ CTTTTCAATCCGCTTAGATTGTTACTCTCAAAA 1724757 28 100.0 32 ............................ AACTTGACTACCACATTCGCACGGCCAGTTAA 1724697 28 100.0 32 ............................ ATTATTGAGCAAATAATTTTTAAATACTTTCA 1724637 28 100.0 32 ............................ AAAGGAATTGAACATTGAAACGCAGGTATCGA 1724577 28 100.0 32 ............................ AATCAGCTGTTGGTGGCAATGATCTGATTAAC 1724517 28 100.0 32 ............................ TTGCCTGTATTTGATGGCGAAGCCTCATAAAC 1724457 28 100.0 32 ............................ ACGGTAATCTCACGCCGGAAATGCGGGAGAGA 1724397 28 100.0 32 ............................ AATATGTCCTCCTGCTGAAAGACAAGATTGAT 1724337 28 100.0 32 ............................ TCAAAAGACAACCCCATAGTGTTAATCAGATC 1724277 28 100.0 33 ............................ CTGAAGGTGGTGGCTCGGGGGCGGCATTAACAG 1724216 28 100.0 33 ............................ AGGAACCCGCTAACAAACTTACGCGCTCCAAGC 1724155 28 100.0 33 ............................ AAAAAGTTGGACAAACAATACTGTCACGATCTC 1724094 28 100.0 33 ............................ GACATATCATTTCAATATTTATCCGCACCCAAA 1724033 28 100.0 32 ............................ AGTCGGTGTCTTTGAGAGAGCAACCCCAGTGC 1723973 27 78.6 0 A............T......A..-.T.C | ========== ====== ====== ====== ============================ ======================================== ================== 21 28 99.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACGGGAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATTAAAAGGCCTATTCCTTTTGCAGAGGAGACAGTGAGAATGAGGTTTTTATTGGTCAATCGGAATAATTATGATCGGTAGAATATGAGGTAAATAAATAACCTAATTTCATTCTTGCTATAATTTCCGATCGTTTCCTTTTGTAAAAGGAAAAAGACGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTGGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : TTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGATATTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCGCCGGTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAAAATAAGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCTGATCAAATTGCCCTTGTCACTGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //