Array 1 164641-163434 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCOV01000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain ARS-CC457 NODE_2_length_510981_cov_91.4248_ID_18922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 164640 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 164579 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 164518 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 164457 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 164396 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 164335 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 164274 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 164213 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 164152 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 164091 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 164030 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 163969 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 163908 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 163829 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 163768 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 163707 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 163646 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 163585 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 163524 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 163463 29 96.6 0 ............T................ | A [163436] ========== ====== ====== ====== ============================= ================================================== ================== 20 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181988-180801 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCOV01000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain ARS-CC457 NODE_2_length_510981_cov_91.4248_ID_18922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181987 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 181926 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 181865 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 181804 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 181743 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 181682 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 181621 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 181560 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 181499 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 181438 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 181377 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 181316 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 181255 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 181194 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 181133 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 181072 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 181011 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 180950 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 180889 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 180828 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //