Array 1 5355-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKE01000009.1 Brevibacterium casei strain DE0341 NODE_9_length_154734_cov_44.797667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5354 29 100.0 32 ............................. GCCCCTGCGGCGGCCCTGGACGATGAGAGCGA 5293 29 100.0 32 ............................. TCGGCACACGGTCGGGCATCGCACCTGGTCAG 5232 29 100.0 32 ............................. CCCTTCGCGGCACCGTCGACCGACCGGCCACG 5171 29 100.0 32 ............................. GAATCCGCTGCAGAAGCCGCGCTAACACTGCG 5110 29 96.6 32 ............................C CGCTCGATGCAGTGAAAGAGCAGTGGCCGACG 5049 29 96.6 32 ............................C CCGCTCTTGTCTGTGGAGCGACCATCAGGGCG 4988 29 100.0 32 ............................. CGTTCGCCACCGGTGGGGTGTATGGGCCGGTG 4927 29 100.0 32 ............................. TCGATCGGGAAAGATCAGATCGCCCGCACCCG 4866 29 96.6 32 ............................C ACCGCCGAATGTGGCCATGGCAGTGCCAACCG 4805 29 100.0 32 ............................. ATGGGCGGCGACATGCGCCTCTACGTCGTCGC 4744 29 96.6 32 ............................C TCGTCGAGGAGGGCACGCACGAGCTTGAGGTA 4683 29 100.0 32 ............................. TTCCGTCTGAGCCGTCTCCAACGCCTGCTTCG 4622 29 96.6 32 ............................C AGCTCAGTGTCCTCAACGTCAAGGTCGCGGGG 4561 29 96.6 32 ............................C CCGAGCCAGGCGCCGAGCAGCGGCAGGCCTAT 4500 29 100.0 32 ............................. GCCGTCAACGACATTGAACGCAACGTCAAGAT 4439 29 100.0 32 ............................. GTTCGACCCAGCCGACACTCCCGCCCGGTCGA 4378 29 100.0 32 ............................. ATCTCCCCCGAGGTCGCGCGCCTCAAAGACCC 4317 29 96.6 32 ............................C ATGCTCGACTTCATCGGCAAGGGCCACGGATA 4256 29 96.6 32 ............................T GCCCACTGACGCCATAGCGTTGGCCATGCCGA 4195 29 96.6 32 ............................C CTCTACCTCTCCGGGGGTGAGGCGATCATGCG 4134 29 96.6 32 ............................C ATGGTCAGGCCGTCATCGGCCCAGCGGCCGCG 4073 29 100.0 32 ............................. ACGTTGAGATAGCGCGTCATCAGCTCGGCGTG 4012 29 96.6 32 ............................C TACTCGCCAGTGACCACGACGATGAGGAGACC 3951 29 96.6 32 ............................A TGGGTGCAGCCGGTGGATGCGACGACCGCGTA 3890 29 100.0 32 ............................. GCCGTCCGTTCCCGGGTGTTCTGGATGTTCCT 3829 29 96.6 32 ............................C TCCCCGTTCGCGTGGGAAGTGAGAGTCTTGAA 3768 29 100.0 32 ............................. CTGGGACGTGAGGCCATCCTCAGGGAGATCAT 3707 29 96.6 32 ............................C CAGGACATGTCGTTCGACCCCGACAGGGTGAG 3646 29 96.6 32 ............................T CAGTGCGGGCATGGAAGGGCTGATCGCGCGAT 3585 29 96.6 32 ............................C GCGGACACGGTCATTGATCGGTGGTCGCGGAT 3524 29 100.0 32 ............................. AAGTGGTCCACCGCTGAGGGCGGCGCAGATAC 3463 29 100.0 32 ............................. CCGGAGGTCGCGAAAGCACTCGCCAAGTGCCT 3402 29 96.6 32 ............................C GGCACCGTCGTTGAGACATCGCCCGACATGAC 3341 29 96.6 32 ............................T TCCTTTGGTGAGTGGTGAGTGGTCATTGCGTG 3280 29 100.0 32 ............................. CCTGGGATGTATTCCCGAACGTGGATGGTGTC 3219 29 100.0 32 ............................. AAGCTCACGACCGCTGAGTCATACGAGTCGGA 3158 29 96.6 32 ............................C GTGAAGCCGATCACGTACTACAGCACCGCCGA 3097 29 100.0 32 ............................. CCCCGCAGCGCCGCCTGCGCCGTGTTTGTGGT 3036 29 100.0 32 ............................. GCCAGTGGTCCGATCCTCGTGCTCGACGGCAT 2975 29 100.0 32 ............................. GCACGGACTGAGGCACAATCGGGGCCGCATTG 2914 29 100.0 32 ............................. TTCCCCTCGGCGACGCTCAACTCCGCCTACCG 2853 29 96.6 32 ............................C ATGCCGGGGTACACCCTTCGCCATGTCAGCGG 2792 29 100.0 32 ............................. GGTCTCAGTCAACGCTCGCGCGGACCGTCTCA 2731 29 100.0 32 ............................. GTGGTGAGGCTTGTGGTGCGAGACGCACCAGG 2670 29 100.0 32 ............................. CGCAATGAGCGACAGACAGAGTTCGACTACAT 2609 29 96.6 32 ............................T GCCTATATAGGACACATTGAGAGAGTGGCGGC 2548 29 100.0 32 ............................. ATGATGACGACGAGGACGGGGATGATGAAGAG 2487 29 100.0 32 ............................. GGAGAGACCTCTCCGAGCTGGCCCTGAGGGTG 2426 29 96.6 32 ............................C CAGTGTTGCTGAGGTCGCCGCTAAGGCTGGTG 2365 29 100.0 32 ............................. GCACAGGAACTCAAGGGGATCAAGGACTCGGT 2304 29 96.6 32 ............................T CACCAGATGATCGAGGACCACTTCGAAGCCAT 2243 29 100.0 32 ............................. TCCGTCGGGAATGGGGGTCTCAAGCCATCCGT 2182 29 100.0 32 ............................. GAAACCAGCATCATGACCAGCACCGACCAGCC 2121 29 100.0 32 ............................. CAGGTCACGACGTACTCGATCAGATCAGGTTC 2060 29 100.0 32 ............................. CTCGGGGATATGCGGCGTGGCGCTGACACGAC 1999 29 100.0 32 ............................. AACGGCACGGTCGCGGGACCAGCGAACGAGGT 1938 29 96.6 32 ............................C ATGCACTACCTGCTCACGCCCGCCGACTGAGC 1877 29 96.6 32 ............................C GAATACGGGTACGCGCCGATCACGGTCACGAA 1816 29 96.6 32 ............................C TCACATGATTCTCACAAGAATGCCACTACGGC 1755 29 96.6 32 ............................C TCGTCGCAGAGGTAGTCGACGGTCCAGCCATC 1694 29 96.6 32 ............................C GTCGACTCCATCGCCTTCGCGAGGTTCGCGAT 1633 29 96.6 32 ............................C TCCTCTGGTGAGTGGTGAGTGGTGAGTGATCG 1572 29 96.6 32 ............................C ATGGCGGTCAGCGCGTGCCCTTTTTTGTGTCG 1511 29 96.6 32 ............................C TACTTCTCTGGCCTAGCCTTCGACGGGACGCA C [1501] 1449 29 100.0 32 ............................. GGATTGCGCGAAGCCCTTTCGGCTTCGTCCGT 1388 29 96.6 32 ............................C AGGTCAGCGAGCGTTGCCATGTCGCCGGTCCT 1327 29 100.0 32 ............................. GCCCTGCAGCGCCGAGTCGGTGCGAAGGCTGA 1266 29 96.6 32 ..A.......................... GTCGCCCTTGAACGTGGACCCGTAGAGGGTGA 1205 29 93.1 32 .......T....................C GTCATGGCGAGGGCCTCGCGGGCCTGGGTGAC 1144 29 96.6 32 ............................C TACAGTGCCGCCGACGTCTACGCGGCCACCTA 1083 29 96.6 32 ..A.......................... GCCTCGACGAAGGAACTGGTGAGGTTCGAAAC 1022 29 86.2 32 ...G.....A.G................C CAGCTCCTCACGGACGCTGAGGTGCGGTTGAT 961 29 93.1 32 ........T...................T CTGGGCAGGTCGAGGGGGTACGGTGCGTCCTT 900 29 79.3 21 ......G....G.T.......T.....GC TCGAAGCGCCTCCCGGCTCAA Deletion [851] 850 29 72.4 0 ...G.T....TG.A.T........C.T.. | ========== ====== ====== ====== ============================= ================================ ================== 75 29 97.4 32 GTGCTCCCCGCCCCCGCGGGGATGATCCG # Left flank : TCGTTCGCACTCGAGCTTCGAGACGATCATCGAATCGATCAGGGACCGACTCTTCACCCTGCCCGATCCCACCGTCGTCCTCACCGGCCACGGCGACTCGACGTCGATCGAGGCGGAGAAACCATCGCTCGAGGAATGGATCAAGCGCGGGCACTAAGGGTCGAATCTGGGCCGAGGTCTCTGGATTGAGGGCTCGAGCTCCAGCGAACTGGGCACTCTAGAAACTAATACTTTGGCGCCCCGGAGACGTTAGTCGTCGTCTTCCCGGGTGCGCCGCGGTGCTTGCAGACAGTCGGCTGACGATTTGCTGTCGTCTCGCGGGATCTGCAGGGAGCGCGGCTTCGGCTTTGGGGGTGAATCTTCGATGGCGCACCCTTTGTTGTTTGCCTGAATCACGCCGCAGGGGGGTGCCGATCGTGGCCACACCTCCATACGCGGTATGCAATGCGAAACTCATTGCAGATATCCCGCACGTGTTAGATTCTTGCTGATCAGCAAGT # Right flank : GTGTCTCCGGTGGCATATCGGCCGATGTGCACGTGCTCCCTTGCGATTCGCAGCGTAGTTCTCATGTCGAAGAGAGAGGCCGATTAACTGCCGTTGGCGAGCGCCCGTTACAAGCATTGTCAAGCAGCCGCCGGGGGTCATTGCTTCGTAGAAGATTACGCAATTGACCACCGCCAACCGAACAATCGGGGCGCCAGGCCAATGCATGAGTTTACGGTGTCGCGATCCGGGGCCCTCGGTCCCAGGGGAGGATTGAAACCCCGCTTAGGCAGGGAACAACGCGTCGGCTTACCGATATTTCGGATCATCCCAGCAACAGTGACCGGGAACTGCACCTCCGCTACAGGAATTGTCGTACGAACCGCAGTCTACGTGAATGGTCAACATTCAGGAGTAGTCTTGCCAGCACTTCCTTGACTTCGGTCCGGCCCAGTGCGACTATTCTCATAGTCCTTCGATGCAGACGCTTACCGTTATCTGTTCTGTCATCAACAAGCCGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //