Array 1 228466-226998 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMV01000002.1 Photobacterium phosphoreum strain FS-2.3 CFSAN065483_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228465 28 100.0 33 ............................ GATTACCTGCTTGATACCCAAGCAATGCTATTC 228404 28 100.0 32 ............................ CATATAGCAATCCAGCCAAGTGTGTCTTTAAT 228344 28 100.0 32 ............................ ATCAGGAGCAATCGATTTAACTATCATCGCTA 228284 28 100.0 32 ............................ TCGTCAACAACATTACCTTCGAAATCGTAATC 228224 28 100.0 32 ............................ CTCGCCGATGTGGTCATATACCCTATGTGGTA 228164 28 100.0 32 ............................ ACGTGATGCTAAGAAGATTCGAGCAATTGCTA 228104 28 100.0 32 ............................ ATCAAGTCTAGCCAGCTAGCTAAATTTTACTG 228044 28 100.0 32 ............................ AGAGGGTGCTGTCATCAATGTTGATGGTGAAG 227984 28 100.0 32 ............................ GTTGGTGGTATAGCCAATACCATCCATTGAGA 227924 28 100.0 32 ............................ TTGCCAGTCACGCTTTTTATTGAGTTCATCGA 227864 28 100.0 32 ............................ TTGTGCGCCTTGCGGAAGTTGTAGTAAGCATA 227804 28 100.0 32 ............................ GTCAACGTGGTTAGAAACCGAGGTTTCAGCAA 227744 28 100.0 32 ............................ TCTGATAAAACTTCTTAGATCGCGTAAATCGG 227684 28 100.0 32 ............................ ATAAAAACACACAGCAGATTTCAGTTCCAACT 227624 28 100.0 32 ............................ TCGCGAAGAAAAGACCAACTCAAGCGGTGACT 227564 28 100.0 32 ............................ TGTAATGTTAAACGCTTTTTTCTTGCCGTTGA 227504 28 100.0 32 ............................ AGTATGCTCGAGCATTGGCGCACTTTCATACG 227444 28 100.0 32 ............................ AAATGTTTGCATAGTCTTTGTAAATTCAGTGG 227384 28 100.0 32 ............................ TGAGTACATTGTTAGTTCATCACATGCCTTAT 227324 28 100.0 32 ............................ ATCATCAGCATCAATCCCGTTTGCATCAGTTA 227264 28 100.0 32 ............................ CCAGTTAGTAGTGCGACAATTATAAATGACAA 227204 28 100.0 32 ............................ ACTATAAATGGGGATGTTCTTTATTGTATTAG 227144 28 100.0 32 ............................ TAACATCTAGCACGTTCACCGCTAAACGTGAC 227084 28 100.0 32 ............................ AGGCGCAGAACTTACCCACTGACGGAAAAAAA 227024 27 82.1 0 ...........T........T..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTGGCTGAAAATAAGGGCGTTCCGCCACCACCGCAAAAACCAACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATGGCGGTCGTGTTTGCTATAGGGATATTCCAATATAACGATTGTTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAACGCATTATATACATAGATACACATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAATATCAGTTAAAAAAAGGGTTTTTGGTGGGAATTTACTGTTTGGCTTTTATAAGCAATCACTTATACTAATTTTGCTCCA # Right flank : TACTGGCAGCAGCCATGGCTTCTTTTATTTCATCTGAACCATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTAATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAGCGTATCGGCAGCATCATGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 237010-237818 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMV01000002.1 Photobacterium phosphoreum strain FS-2.3 CFSAN065483_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 237010 28 100.0 33 ............................ ATTAACGCATGGTGTGCATGCTGAGGTATTAAA 237071 28 100.0 32 ............................ GCACATGATAATGCTGATCATTAAATAAAATT 237131 28 100.0 32 ............................ TTTGTTATTACTGGCAATAATGCCAACCTATT 237191 28 100.0 32 ............................ CGGTGCCGCCACTAATGTTGGCTTTTCTGCAC 237251 28 100.0 32 ............................ TTATTACTGATTACTAGTGAACCTAATGTTTT 237311 28 100.0 32 ............................ TGTAATTTTCGGACAGGGACGGAAGTTTTTAG 237371 28 100.0 32 ............................ AAATGGCGGAGGGCTGGACGCGCGAACGATCC 237431 28 100.0 32 ............................ CTTGAGTAATCAAGTTCAATGGCGACCACGAG 237491 28 100.0 32 ............................ TCACTATTTGCAATGCCAGTTACAGACAGTGA 237551 28 100.0 32 ............................ CAGAAGATTTAGAAGCAATGCTAAACGACACG 237611 28 100.0 32 ............................ TGTTGAGCGTCCTGAATGTGTCGAACAACCTT 237671 28 100.0 32 ............................ AGCAACACAAGCGGAATCAGCAGCTATCATAG 237731 28 100.0 32 ............................ GGTGAAATTGAACGTGAGTTTATACGTCAACG 237791 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACCCGTGTTATGGTTATTACGTCAATTCCGAGTGACATCAAAGGTTATCAAACCGTCAAGCGTGTGCAGACCAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCAGATGAAGCGATCCATGCCGTTCCTGATACAGCAGAGCGTAAGTTAACGTTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTGGTGAGTGATGCAACGGATGGTGTATTTAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTCGTTGCATTTAAAATCAATGAGTTATAAGTGATGAATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTTAGCTTCA # Right flank : ATAACTAAAGTACACCGCGAACGTATTCTGCTTATTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCCATCTGACAAACACAAAACATTTCGCTAATAAACCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAATAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCATACAGAGCTGAGATTGTGTATGGCGTCACACCGAATACGTTGAATCGTTACGTTAAAAAATTCAATGCCGAGTTAACTTATTTACAAGCTTTAGGTTTAAAAGAAAAATAAATTATGTAAAGTCCAGTACCTACTGGACTTTACATCAGTGTGATAATGCTGCTTCATTATTCTCTCGTTCAAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //