Array 1 2138347-2138581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024594.1 Porphyromonas gingivalis strain KCOM 2805 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 2138347 37 100.0 29 ..................................... CAATCAGACGAGTTAATAGAACACTAAAG 2138413 37 100.0 29 ..................................... TTATTGGTGATGATAAACAACTTCCTCCT 2138479 37 97.3 29 .........G........................... GATGGACGATGATACGGCCTATTTCGGTT 2138545 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACT # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGATCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTTGATGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCCCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2381520-2372740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024594.1 Porphyromonas gingivalis strain KCOM 2805 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2381519 30 100.0 38 .............................. GATATCGGAGGTGTCGACATGTCGGAGGTCGTATCTGT 2381451 30 96.7 37 G............................. CGGCGACGGCCCAGACGACATCAATAGCGACCTGCTG 2381384 30 96.7 37 G............................. AAAAGTAACAGCAACGATAGGACTTTTTCCATTCCAA 2381317 30 96.7 37 G............................. CATCTGCATCCTGTCAAGCACGTAATCAGGTGGCAGA 2381250 30 96.7 36 C............................. GGTCGAGCGCCTTACACAGGCGGGCGAGCATGTCGA 2381184 30 96.7 35 C............................. CCCAGCCACACGCTGATACGGTTATATCGCAGCTC 2381119 30 100.0 35 .............................. TACCCAGCCCCAATCGAACGTAACCCCCGACGTCA 2381054 30 100.0 37 .............................. CCGGCCACGTCACGTCGAACATGGCCGCTGTTTGCTC 2380987 30 100.0 36 .............................. AACGCGGATACGGTCGTGCAATTTTTAGAGCTATCT 2380921 30 100.0 36 .............................. TGATGTGTTCAAACTATATACCGACGATGTGTTAGA 2380855 30 100.0 38 .............................. CTGGTGGGAGACGAAGATGATTTCTTCAATATAATTAA 2380787 30 100.0 35 .............................. AGTGGGCAACGATATTTTCCATCATGAGTGCTTTC 2380722 30 100.0 35 .............................. CTTCATCCTGTCATCGAGTCGCCGCCAATCATCCT 2380657 30 100.0 35 .............................. CGCCGCAGGCATCAAGGCTACGAAGCGCAACGCAG 2380592 30 100.0 37 .............................. AACCTCCATCAGCGCTTTTTTCTCGGCCGTCAAGGCC 2380525 30 100.0 34 .............................. GAGCCTCGATGCATCCCGAGGCGGAAGCCAGCCT 2380461 30 100.0 37 .............................. AGAGACTTGTGTCTGATTGTCTGTGCAATTATTTTGT 2380394 30 100.0 34 .............................. CGATCAGCTGCATAATCTGGTCGTTGATGGCGTC 2380330 30 100.0 36 .............................. CGAGGCGGACAACCCGGCCGTCAAGGCGGATCAGAT 2380264 30 100.0 36 .............................. CGCAAGCAGTACCAACGCTTCGGATATTTTCCGCTT 2380198 30 100.0 36 .............................. AGCGATTGGGTACACCTTGTTGTCGAAGAGCACCTC 2380132 30 100.0 36 .............................. AGGCGAAAGAGGAAAAGAGGTCTCTTTCACAGGAAG 2380066 30 100.0 36 .............................. CACCTTTACCGCGCTGGGGCGGGGCCAGTCGCCCCG 2380000 30 100.0 36 .............................. GCTCTATAAGAGCATTATCGAGGGCGGAAAGTTGTT 2379934 30 100.0 36 .............................. CGCCGCTGGCACACCTCCCCCGTGTCAAAAGGGGGG 2379868 30 100.0 35 .............................. ATGTCGAGATCGATCAGCATCCTGATCACCACCTC 2379803 30 100.0 36 .............................. CTTCAAACTTCGCGTACCCCTTGCCCGACTCCGCTT 2379737 30 100.0 35 .............................. GCAGTAGACGATAGAAGCCTGCGTGTCTGTTGCCC 2379672 30 100.0 36 .............................. GACCCATCGAAGCACGCGGATATCACCTTCGCCGAA 2379606 30 100.0 36 .............................. TTGTACCCACGTGCACGCTGAATAACCACAAGGTCT 2379540 30 100.0 37 .............................. TGTCAATATGCCGGCGATTTGATCCCAGATGCTTCAC 2379473 30 100.0 36 .............................. ACAGCCATCGAATGTCCATTGAGTCGAACGTGCATA 2379407 30 100.0 36 .............................. TTTTTCCCTCTCCCGACGCCCCTGCAGACCTCGCGA 2379341 30 100.0 36 .............................. GTTAGGAGGTAGCCGTGCCCGGGGCGGGTGGCTATA 2379275 30 100.0 35 .............................. CACGTTACGCAGCGCGGTACCCGCCTCCGCGCCCT 2379210 30 100.0 37 .............................. GCAATTTCCTTTGCGATGCCGATTCGTTCCTCCCCTT 2379143 30 100.0 37 .............................. TATCCGCCTCGCCAAATTGGCGCGCGGAATAACAGAG 2379076 30 100.0 36 .............................. GCTGATATCCCCCACCAGCAGCATGCTTAATTCCTT 2379010 30 100.0 35 .............................. TGCTTCTGTCATCCGGCAAATTAGAATACTTGAGC 2378945 30 100.0 37 .............................. AGCGCGCCATCCCTGAAGTGCCCGGCAAGGCATTTAT 2378878 30 100.0 35 .............................. CTTGTGTAGAAATTTGTCGTTGGCGCGATGAGGAA 2378813 30 100.0 36 .............................. TGGTTCTAAGCCCACAAAGATATTCCCAAACAAAGT 2378747 30 100.0 36 .............................. CCATGCGTGCTCAGGAATCTATCCAGTTGCTCCTTG 2378681 30 100.0 37 .............................. ATCCACTTGCTGCCGTCGCCGGCAGCGTCTACGTGTA 2378614 30 100.0 36 .............................. AGCTCGAGCCGGAGATGGGATACGTGGATGATTCTA 2378548 30 100.0 35 .............................. GCACCTCTTCGGGATCGAGCACCCCGTCTTCGCGA 2378483 30 100.0 36 .............................. GGCGACCGGGTACACATTATTGTCGAATAGCACGTC 2378417 30 100.0 35 .............................. CGACCATGAGAAACTTTATCGATTATATGAAACTC 2378352 30 100.0 35 .............................. TCAATTTTGTTGTCAATTTCCCGTTCTTGGCCCAA 2378287 30 100.0 36 .............................. CCATGAATTGAGGAAGAGGGGCTATTTTATAAAGAA 2378221 30 100.0 37 .............................. TCGAGATTTTTTTGTTTGGGAAAAAAGAATCTCCGTA 2378154 30 100.0 36 .............................. CTTGCTCTAATGAGCCTAAGCCTGTAGAAGAAACAA 2378088 30 100.0 37 .............................. ATTGTCAAATAGAAGAATCGGCTTAGCGTTGTAAAAG 2378021 30 100.0 37 .............................. TCGAGGAACTGTGCATATACAAGCATATTTTCCCGAC 2377954 30 100.0 36 .............................. GCGTTTGTGCCAATTTTTTCCAAACTGGAAAAATTC 2377888 30 100.0 36 .............................. GTAAAATACAAGGAGATAAAAGCAATCGAAAACAGT 2377822 30 100.0 35 .............................. TGGAATCTCCTTTGATCCCATAGTTGTTTTTTGTC 2377757 30 100.0 34 .............................. ACCAAGATGTCAAGAAGTCCATCATGATGATTGT 2377693 30 100.0 34 .............................. TCGAACGCCTGTACATCGGCTATCTGAATACCGA 2377629 30 100.0 36 .............................. CTTGTAGAACTCGCTGACATCGATAAGCCAACCCGA 2377563 30 100.0 35 .............................. CTCCTCCATCGAATCGGGTATCTTGATCTCCACGT 2377498 30 100.0 37 .............................. TTCGAGGACGAAGAAGGGAACGCCGTCGTTCTGAACA 2377431 30 100.0 36 .............................. AGGGATTATTGAATATTGTGGAGAAGCTATATCAGA 2377365 30 100.0 34 .............................. CGGAAAAACAGAGGAGGAGATTGGATGACGGCTG 2377301 30 100.0 36 .............................. ACAAGAAGATTCTCGACGCTCTCTACAATGAGAAGC 2377235 30 100.0 35 .............................. TTCCTGTGAAGCCGACCACCCGTCCTGTAACAGTG 2377170 30 100.0 36 .............................. CATAAGATGGAAGTGGCAAAGGCGAAAATAGACGAA 2377104 30 100.0 36 .............................. TGGGGGCTTTTTACGCACACTATATCGCAGAGCATA 2377038 30 100.0 36 .............................. CTCCACCGTTACCGTACCCGCCTCGCGGCGCACAAC 2376972 30 100.0 37 .............................. ATATTGCCCGATTCAGGCGTATGAGGGGTACGACAGC 2376905 30 100.0 36 .............................. CCTCGATGAACTCCACCCCTGTCACGCCCAGCTCGG 2376839 30 100.0 36 .............................. AAAGCGGAGCTGGTACAAGACACGCACGGGCAAAGG 2376773 30 100.0 16 .............................. TGTGTGTGTGTGTGTG Deletion [2376728] 2376727 30 100.0 36 .............................. CTGTATGGTGCAATTGAAATGCAATTTCCTTTGCGA 2376661 30 100.0 37 .............................. TTCAACCTCCGCCCCGGCCTCCCCGTCAGCAATCAGA 2376594 30 100.0 36 .............................. TCGAAAGCTCCCGGAAGTATCTTCTCCCTAAATCCG 2376528 30 100.0 37 .............................. CAGGAACAGGCGATCAGGGAAGAGATAGCGAGGATAC 2376461 30 100.0 36 .............................. AGAATTATCTCAGGCTCTTAGCGAAGAGGGATTTGT 2376395 30 100.0 36 .............................. GGCTTCCTCCTGTAAGGCCCGTTCCTCCTCCGTGTA 2376329 30 100.0 36 .............................. CCCAAGCCCGAACGGTAGCACTGCCACAAGCCCGAA 2376263 30 100.0 35 .............................. TACTGTTACAATTTTGTCTGTTTTAAGTTTTACAG 2376198 30 100.0 37 .............................. GTATTTGTCTCTTGACTAACCCCGTGATAGCGTCAAG 2376131 30 100.0 36 .............................. CTCAACACGTCGGAGGAGGGCCTTGTGTTCGCCAAC 2376065 30 100.0 36 .............................. ACGCTGGAAAAAGATTACTCGGTTTCGGGAAAGGTT 2375999 30 100.0 36 .............................. AGGCTTGCCCGTCTTTCGATGTTCCTCGCTGGCTAA 2375933 30 100.0 35 .............................. ATGGAAATGCTATTGCAGATTGTACAGATACTATT 2375868 30 100.0 36 .............................. TCGGCTGTGGGGGTAGAGCCATGCCGTGCTTCAGCA 2375802 30 100.0 35 .............................. GCGGAGGAATCGAACCTCCGTATAGAACTATCTAC 2375737 30 100.0 36 .............................. CACAAGCGTGCATGGTCTCGACGAGAAGCAGGAGCT 2375671 30 100.0 36 .............................. ATGTGTTTGTCACCGCCCCAGGCATGACTGCTACGA 2375605 30 100.0 37 .............................. TAGTTACAAAACATAAACAAGAAAAAAGAATTTTCAT 2375538 30 100.0 34 .............................. AAAGATGAATCCGGGTAGGGCATACTCGTGAAGT 2375474 30 100.0 34 .............................. TAAAACAAAAAATTTTAGAGATTATGTTACGATC 2375410 30 96.7 36 ..............G............... ATTGTTGCCGCCAGCCCACCGACTCCACCCGCCGTA 2375344 30 100.0 39 .............................. GCTCGGGTTGTGCGCTCGGGTTGGGAACGATGCTGCACG 2375275 30 100.0 38 .............................. GGACAATTCTTGCTCCGCCGAGGCGGGCTTAAGCACCT 2375207 30 100.0 37 .............................. GCCAGCTTCTTGGCTTCTTGGCGCGCTTGGATAACCT 2375140 30 100.0 35 .............................. TTTTTGGAAGATGTATCGTGGAGAGGTGCGGGCTT 2375075 30 100.0 36 .............................. CATGCCCCTTCCACGCGGATAACAACGCTTCTCTGA 2375009 30 100.0 37 .............................. GCCACAGCCCGAAGAGCACCCGTCCCTTGCTGAAGAG 2374942 30 100.0 37 .............................. GAGCAGCTGCGCAATGGGTGGAATCCGTTTATTGAAG 2374875 30 100.0 36 .............................. CGTAACCGCCTCTGTAGACCGCTCCACGCAGTCGTT 2374809 30 100.0 36 .............................. TATTTAACGACGAGGACGGCGTGCGCAAGGCGGAGC 2374743 30 100.0 36 .............................. TCGTTATGACGGGCGACTGTATCCCTTGCGTTTACA 2374677 30 100.0 37 .............................. AACCAGTTTGGGCTGGAGGCGTCGGAGGCGGCACGGG 2374610 30 100.0 36 .............................. AATACAAGAAAGTACTCGTGCTGTCGACCCTAAAAT 2374544 30 100.0 36 .............................. AAACCGCCGACGGAGCACCGGCCGGCACCATCCGCA 2374478 30 100.0 37 .............................. CCTCCGACCCCTTTTGGGCCGAGTACTACCCGCCCAA 2374411 30 100.0 35 .............................. GGCCGAGGCGTTCGCCAAATCGTGGAGGCGCGGAA 2374346 30 100.0 35 .............................. CCGCGTATATAACAACGCGGAGATAACCGTATCGC 2374281 30 100.0 35 .............................. GTGGAGGGCCTCGGAGCGCATTTTTTTCAGATTCA 2374216 30 100.0 36 .............................. CAGCGCTCCGCGGCCCTGCACGGCGGCAACAAAGTC 2374150 30 100.0 35 .............................. CAGGGCCAGGTCGTGGTCGTAGAGCACTACAGGGT 2374085 30 100.0 36 .............................. GAGTAGTTTATAGTTGTATCAATGTAATTTGTAGAT 2374019 30 100.0 36 .............................. TCAAATTCTCTACAGTCAAAAACCCCCGGCTTTAGG 2373953 30 100.0 36 .............................. TTCATAATTAAGGGAATCAGGCAAAATTTTAAGGAG 2373887 30 100.0 37 .............................. GACTATTACCTACTAATCCATTCTGGAAGTAGAAGCC 2373820 30 100.0 37 .............................. TCCGACTTAGATGAATTGAAGGAAAATCTTTCTGAAG 2373753 30 100.0 35 .............................. TATTTGTGGTTTGATAAAATAAAACATTGCAGCTA 2373688 30 100.0 35 .............................. TTCACATAAAACTCGGATTCTATCTTTCTCAAGAG 2373623 30 100.0 36 .............................. TGTGTCTTTTTTCACGAGATATAGTATTGTAAACAG 2373557 30 100.0 36 .............................. CACAGCTGTGTCCATCAAATAGGGAAAGTACATTCA 2373491 30 100.0 37 .............................. TGTACGAGGAAACGATGGGGAAGCTGGTAGAAGTGCA 2373424 30 100.0 37 .............................. CGCTGGGATAAGCATTACAACTGTCGTATCTTTCTTA 2373357 30 100.0 35 .............................. AAATTGTCAGAAAACCGCCCTCCCATCGAAAACCG 2373292 30 100.0 36 .............................. TATCTTTCAGCGTGTAGTACTCCGGATATATCGACT 2373226 30 100.0 34 .............................. GAAGACGGGACAAAATGTAAGTTTGTCCCAGCTA 2373162 30 100.0 36 .............................. GGACTTTTGCGTTATACAGGAGCCTCTCAATCACAT 2373096 30 100.0 36 .............................. AAGAGCACTTGAGTCGTTTCGTCTAAGTTCTCGACG 2373030 30 100.0 36 .............................. TTCATGCGATTATAGGCCAATATGTACAATCTCCCA 2372964 30 100.0 36 .............................. CGAGCGATAAGACCCCACAAAAACAAACAATCCGCA 2372898 30 100.0 36 .............................. TCCCGCGAGAAGACCTGCTCACAAGAGATGAAGCAG 2372832 30 100.0 33 .............................. GCCGCTGCCGTTCCATGACGAGCCCGCTGCCCT 2372769 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 134 30 99.9 36 ATTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TCGGGAGAAACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTACTATACAATGAATTAACAAACAAAACACACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 2415059-2415471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024594.1 Porphyromonas gingivalis strain KCOM 2805 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 2415059 38 100.0 36 ...................................... ATTTTTCGCTCTTATCAGGGGATTTTTGTTTTCAAA 2415133 38 100.0 38 ...................................... TCTTCTTCAATCAAGTCTGTATCAGAAGCTTGAACTAT 2415209 38 100.0 42 ...................................... AACTGGTCTAGTGCATTCTGAGCTGCAGCCTTAGCAGTTTTG 2415289 38 97.4 35 G..................................... TCTACACTGGCAATAAGATCATCATCCACAGACTT 2415362 38 97.4 34 .....................T................ ATAATCTCCAGAATCTCTCACATCAAGTATGATA 2415434 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================== ================== 6 38 99.1 37 ACTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTCTTTTTCGAAAATCCAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAGGAAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTATAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGT # Right flank : CACTGATTACCGAGGGTTAGAACGAATGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGTATGCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACATCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTATCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCGCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGAGGGGACAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //