Array 1 17553-19920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH967236.1 Vibrio cholerae HC-55C2 vcoHC55C2.contig.75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17553 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 17613 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 17673 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 17734 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 17794 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 17854 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 17914 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 17974 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 18034 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 18094 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 18154 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 18214 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 18273 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 18333 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 18393 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 18453 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 18513 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 18573 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 18633 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 18693 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 18753 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 18813 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 18873 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 18933 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 18993 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 19053 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 19113 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 19173 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 19233 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 19293 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 19353 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 19413 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 19473 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 19533 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 19593 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 19653 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 19713 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 19773 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 19833 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19893 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //