Array 1 18414-18187 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQK01000004.1 Bacillus sp. NMCN6 NODE_4_length_324361_cov_49.1843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18413 32 100.0 32 ................................ TTTCTCCAAATTTCGAATCATGTACAGTTAGC 18349 32 96.9 34 .......................T........ TTTTGGCTGGTTCATCCGCTCCGCCCCGCTTCCA 18283 32 100.0 33 ................................ AACTGGTCTCTTATTCCATCAGCAAAGTATTTA 18218 32 71.9 0 .........A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ================================== ================== 4 32 92.2 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TATGAGTGCGTGGATTGAAATATACTGGCCTTGATCAGAGGCACGTCATAATAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACTGGACCTGCTTTGTATGGATTCACTACAGTTTGTCGCACTCTATATGAGTGTGAGGATGGAAATTCTCGTCAGTAGATAGCTTTAAAGATATATTGACAATTGCGCTTGATATAGGTATGAAAAACATGACTTACTCAGTAGTCATATGTTTAAATGGATTCAAGTCTGTTGATGAAACAGTGAAAATAGGTATGATTTTCAAGAGCAATAGTTTTTAATTAAATAGGGTTAAGAAATATTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAACATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTACAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TTCTGCGAATTACATAAATTCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGTCCAACATGGAAAGAAGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGCGAAATAATAATGTCTTCAATTTCATCGAATCGTGCACGCA # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19058-18762 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQK01000004.1 Bacillus sp. NMCN6 NODE_4_length_324361_cov_49.1843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19057 32 96.9 33 ...........C.................... TTGCAATTTCCAGGAGTCTCTCAGTCTCTTCGC 18992 32 93.8 36 ...........C....A............... ATTATCCAAGTCCTCCCATCAACCCAGCGACAGCAA 18924 32 100.0 33 ................................ ATACTGGCCTTGATCAGAGGCACGTCATAATAA 18859 32 100.0 34 ................................ ACTGGACCTGCTTTGTATGGATTCACTACAGTTT 18793 32 90.6 0 ...................T.A....G..... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGTGTCAAGCTAGATAAGATGAACAAAGAGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCTATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTATCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAGAATGTATATTTTTTAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGCTCATTCCCTAAAAAATGTTATAAATAGGGCGGAAATTGCA # Right flank : TCTCGTCAGTAGATAGCTTTAAAGATATATTGACAATTGCGCTTGATATAGGTATGAAAAACATGACTTACTCAGTAGTCATATGTTTAAATGGATTCAAGTCTGTTGATGAAACAGTGAAAATAGGTATGATTTTCAAGAGCAATAGTTTTTAATTAAATAGGGTTAAGAAATATTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAACATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTACAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTCTCCAAATTTCGAATCATGTACAGTTAGCGTCGCACTCTACATGAGTGCGTGTATTGAAATTTTTGGCTGGTTCATCCGCTCCGCCCCGCTTCCAGTCGCACTCTACATGAGTGCGT # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27040-26740 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQK01000004.1 Bacillus sp. NMCN6 NODE_4_length_324361_cov_49.1843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27039 32 100.0 34 ................................ ACGATTGACGTTAGTATGACAAAAGAGTGGTATT 26973 32 100.0 35 ................................ CTTTCACTTGAACGTTATCAACAATCCATCCACCT 26906 32 100.0 34 ................................ CGCAAAGCAGATGCCGAAACTTGGACGGCTTGGG 26840 32 100.0 33 ................................ GATTTCTTCGTCTGTTAAATCTTCATAGTATTT 26775 32 84.4 0 .......C...T............T..TC... | AC,G,A [26751,26757,26766] ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TCTATATGAGTGCGTGGATTGAAATAACGCTGAGGATGCACCAGAAGGAAAGAAAGACGCGTCGCACTCTACATGAGTGTGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTAACTTAAAGATCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGTTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27744-27383 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQK01000004.1 Bacillus sp. NMCN6 NODE_4_length_324361_cov_49.1843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27743 32 100.0 33 ................................ TCATCGTACGCGTATATTGGCTTCATATGGTTT 27678 32 100.0 34 ................................ AACTTAGCTCCACTCATAATCCACTTTCTAAAAG 27612 32 96.9 34 ...........T.................... ATAATATTGCCCGATCCTGCATAGGCGTATCCTC 27546 32 96.9 35 ...........T.................... AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 27479 32 96.9 33 ...................T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27414 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGACGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCATGCAAGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACAGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGATTGACGTTAGTATGACAAAAGAGTGGTATTGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTTCACTTGAACGTTATCAACAATCCATCCACCTGTCGCACTCTACATGAGTGCGTGG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //