Array 1 2281757-2277759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 2281756 37 100.0 37 ..................................... CCGTTTGATCCGGTCCCCTGCAGCATGAGTGCCTTTT 2281682 37 100.0 36 ..................................... CCGGAATGGTATATACACATCGGACGGGACAAAGGC 2281609 37 100.0 34 ..................................... TCGTCCCGTTGTTTCCGTTGCCCGAGCTATCTAT 2281538 37 100.0 37 ..................................... GATCACTTCCGGGAGTAGGCATTTAGGGATTTTGGCC 2281464 37 100.0 39 ..................................... ATAGAGGGTCTATTTTCCCACGGGAAATAATAACGATTT 2281388 37 100.0 36 ..................................... TTGTCCCGCCTACTTTCAGGACCATCGACCCGAAAT 2281315 37 100.0 36 ..................................... GTCAAAATTCCCCTTTTTCTCTCATAAATTCATACA 2281242 37 100.0 36 ..................................... TCTTTTGAGAGATTCATAGTTTAACCCATTTGTGAT 2281169 37 100.0 37 ..................................... TTGAAATCCGGGTTATGCCATTCTTCCGGATGTTGGT 2281095 37 100.0 37 ..................................... GTTCTGTGTGTCCCTGCCTGAGACATATTTCAATAGG 2281021 37 100.0 36 ..................................... TCCACTTGGTGGCCACGTCGGTCCATTCGGATGCGT 2280948 37 100.0 36 ..................................... AGCCTTCAATTTTCCGGAAATATCAGGATTATAAAA 2280875 37 100.0 35 ..................................... ATATACTCCACAGTCTATTCTGTCAATGATCCCGG 2280803 37 100.0 36 ..................................... AGCATGGCAACCGGACACGGACCCAAAAATCAATGA 2280730 37 100.0 35 ..................................... TTTATACCACGGTTCATATAAAACTTCGAAAACGG 2280658 37 100.0 36 ..................................... AAAATATTGGAGGGTGAACTATTGGTCAAATATCCT 2280585 37 100.0 36 ..................................... CTGTATTGTACTGGTGTGGTGGCGTAGTCGGCTGAG 2280512 37 100.0 35 ..................................... GCAGTCGGCGGCTTCGGGTACTCAAAAGGGGCTAA 2280440 37 100.0 34 ..................................... ATTCATCGTGAAAAGTATCACAGATTTTATTCAG 2280369 37 100.0 36 ..................................... ACACTCTCATTCCACGACTGCAGGGTAGGGGGCTGA 2280296 37 100.0 36 ..................................... TAGTTGGATTTGAATATGTGGCCCCGAGGTCCACGT 2280223 37 100.0 36 ..................................... AAAATCCTGCAATTTTTGGAAGACTGCAGGGAGATC 2280150 37 100.0 43 ..................................... TAGAGAGTAAGTATTGTATATGTATATGTATATGTATGTATAA 2280070 37 100.0 34 ..................................... TAGTTTAGGTTGCATAGTAGAGTATACAGTAAGA 2279999 37 100.0 36 ..................................... AGAATCAGGTTATCCCGTGACAAACGCACTGAGAAC 2279926 37 100.0 36 ..................................... TCCAGCAGCTATTAAGCGGGGACGGGAAACGGAGAG 2279853 37 100.0 35 ..................................... CCAAAAAATCAAGTTTGGGGCAGGCTTCCCGACCG 2279781 37 100.0 49 ..................................... TAAATTTGGGCCTGCCGGTGTAATCGCCGCAGGCGTAGGTGCTGCTGTA 2279695 37 100.0 36 ..................................... TTCAGGATACGACATGACCCCGAACAACACACCCCC 2279622 37 100.0 37 ..................................... AAGATTTCGAGCACGTGGAAACCATGCCAGACGGCAG 2279548 37 100.0 36 ..................................... CATCGGTCCATTTTGTAGACGGTATGCCGGATTCAG 2279475 37 100.0 37 ..................................... ACCGCAAATACGCACTATCCCCCGCAACCGCGTATGA 2279401 37 100.0 37 ..................................... TGGAGTATCCCATCATCTCTCTAACTGTTTAACACCG 2279327 37 100.0 37 ..................................... GAGGTACAAAGATTATAATGCCTATGCAACCGCCTAT 2279253 37 100.0 35 ..................................... TCCAACTTCTCCCTTTCCTCCCGAGAAATCCCCGG 2279181 37 100.0 37 ..................................... TCATCCTCCATCAAAGTGGCCTTTGACATTGGAATAA 2279107 37 100.0 37 ..................................... TCAGTTCCTTTCCAATAATCGCCACACCTAGAATGGC 2279033 37 100.0 37 ..................................... TCAGTTCCTTTCCAATAATCGCCACACCTAGAATGGC 2278959 37 100.0 36 ..................................... GATGTAATTCTTCTCTTGTCGATACAACTCTAATTT 2278886 37 100.0 36 ..................................... ACATTTCAATGCAAAAGAAGGTTCCAACTCACACCC 2278813 37 100.0 35 ..................................... ACGTCCTGACTCATGGCTACCTCAGTGAGTGCGGT 2278741 37 100.0 35 ..................................... TACCCGACGAGAGCCTGAGCGCCCTCCGTGAATTT 2278669 37 100.0 36 ..................................... TTAACACTGCCTGAAGCTTGGGACCTTGTAACGCGT 2278596 37 100.0 32 ..................................... GATGATAAACGGAGGAACAAACAGTGTATGAA 2278527 37 100.0 37 ..................................... TTTCGGTTACGAGGGAGAGAAAGACGGATACCAGGAA 2278453 37 100.0 35 ..................................... ATCTTCGCGTCTGTCCTGTCAGGTTCGTTCAGCTC 2278381 37 97.3 37 ....G................................ AATACCAAATGCCGTCACCAGTTGTCCATAAGGCAGT 2278307 37 97.3 37 ....G................................ TACGGTAATCTATTGGTAATCCTGATATTTTGGTCAG 2278233 37 94.6 37 ....G.T.............................. TTGAGTAGTCTGACCTGCAGCACGAGTAAGCATGGGA 2278159 37 97.3 35 ....G................................ ATAGTTGTGTATTTTTGTTGTACATATTATCACTG 2278087 37 94.6 37 ....G.T.............................. TATAACAATTAGTGTGAGATGTTGACCCGATTACAAG 2278013 37 97.3 34 ....G................................ TTCATTCTCTTTACATGCTCGTATGTGTTAATAT 2277942 37 81.1 35 .G..GA..AGT..C....................... CTTCCTACAACTGCCTGAAGAGCGTCAGCCATATT T [2277927] 2277869 37 78.4 35 TG..GA..AGT..C....................... ATTACTCTTATCGGTAATTGATCCCATCTATTATT T [2277854] 2277796 37 75.7 0 TG..GA..AGT..C.............T......... | T [2277781] ========== ====== ====== ====== ===================================== ================================================= ================== 55 37 98.4 36 ATTCTTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATTGGAATAAAGCGGGCAGATGCCCTGCTCTTTTACGCTTTCGATAAATTCGGCTTCCTCAAGGAGCCTGAACTTTTTTCCTGCATTTTCCGTGCTTATTCCGGCTGACATTTCGTTTTTCAAAACAGGGACCTGCATTTCGGCAACGGTATCCATTAAAAATTCGGAGACGTAGGGGTGGTCGAGGATTATCATTTTTTATTCCTTTTTTGGGGGATTTTGGGTTGGGTGTTATGAGGCGGATAATGGGGGAGGTTGGTAATATTTATTGCGGAATACTGAGGCCTTAAAAGCACCCCTGTTTTATTCTTGCAAAACAGTTTTATATACGAAAATTTAATAGAAAGTTACTCAGATATAATTAAAGTTTTTCAAACAATCAAAAACCCGGATTTTCTTGTCTATATAAAGGGTTTGATAAATTACCATCAAGAAATTTAGCTCTAAAAAAGGACCCTTTTCAGGCCTCCTTTGGCTAAAAACAGGCAAAAATTCGCGGT # Right flank : TTTATAACAAGGATTAGAACTGGATATGAAGTTCAGGCAGATCAAGGAAATCATTTTGGGATGAAACAGAGCCTCTGGGATCGACATACTAAATTATGGAATTGTGTTTCAGTTTAGTAGTTGCAAAATGAATAGGTTTTTCTGATTTGCTGTTGATACTAATTTAGAGGGATTGAAATGGCTGATTTCAGGGTTCAGGAAGATGGAAGGACGTATTATTGTGAGGATTATGCCTGTTCTATTCAATGTCCGGAGGGGTGGAAGGCTCATCCCAAAAGTCAGAAAGACTCCAGGGATGCAATGGTAATTTTTACAGGTCCTGATATGGCTGCGATCAATTTAGTAGTCGGACCCACCTATGGAATTTGTGAATCCATAGAAGAGATCGAAATATATTCAGAAAGGGCTTTAAAATTCCGCAATGTCAAATCCAGAAAGCGCATAATTGTTAAGGGTATTCCTGCACTGGAATTTCTCTATTCTTACTTTGGAGCTGAAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 2794713-2800216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2794713 37 100.0 37 ..................................... TACATTATTTGTGGATATTTGTATCCAACTTTCACCA 2794787 37 100.0 36 ..................................... AATTCGACGATATTCATGTTGCTGCGTAAAATAAAA 2794860 37 100.0 34 ..................................... AAAGTGTAAAAGATCAAAAAAAAATATATGATTA 2794931 37 100.0 36 ..................................... CGAAATACGCGACCCTGACCACGGCCAAGTTGACCA 2795004 37 100.0 36 ..................................... ATTTTGTGCTAGTGATGGTCGGGGCGGTGAAGGGGG 2795077 37 100.0 36 ..................................... GTGAACTCGCCATGCTCAACGCAATTGCTCAGGGTA 2795150 37 100.0 34 ..................................... CCGAAAACGCAAAACTATAAATATTGAAATCTGT 2795221 37 100.0 36 ..................................... TGATTCTTACTGGTTAAATGCTTCTTTACACCCTGA 2795294 37 100.0 35 ..................................... TTACCGTGTACCCTGCCGCCGTAGCCTGGGATGTT 2795366 37 100.0 35 ..................................... AAATGGGTACGTTACTGACCGACATTAAGACACTG 2795438 37 100.0 36 ..................................... AGGAATGGATAGAAGAACTCAAAGCCGATTCTGAGG 2795511 37 100.0 36 ..................................... ATATAAACCCAACTACCCTAGGGTATGTAATTTCAA 2795584 37 100.0 36 ..................................... TGTCTGAGAATTAAATCCCCTGTCCCGACAGTGTAA 2795657 37 100.0 37 ..................................... TTGGAAAATGACTGATTGACGCAATCAAACAGGTCCC 2795731 37 100.0 36 ..................................... ATTTCGACTGCGCCCCCGTAGAGGGTTGCGTCGATG 2795804 37 100.0 35 ..................................... TGTGTTATCCATGAGCTGACGGCCAACTATTACAA 2795876 37 100.0 34 ..................................... AAAATCCTGCAGTTTCTGGGAAATTGCAGGCAGC 2795947 37 100.0 35 ..................................... CTCTTTCATTGTGGGCTGTGTAAATTTGAGCCCGC 2796019 37 100.0 36 ..................................... ACAGTTACAAACTTCTGTATTAGTTCTTTGTCCATC 2796092 37 100.0 36 ..................................... ATGACGTTCCCAGTGATTGATATATTTTCCAATGTG 2796165 37 100.0 36 ..................................... CAGTACCAATTATTTCTAAAATATTACAATTGTTTT 2796238 37 100.0 39 ..................................... TATATAGCACTATCTTTTACATAGCCAAAGCTATACATT 2796314 37 100.0 37 ..................................... ATAATTATCTAACAAATCTTAAAATAGCTTTGGCCGA 2796388 37 100.0 38 ..................................... TACACCTCATCCACAGAAAAACCGGTCCATTCAACAAG 2796463 37 100.0 34 ..................................... CCATCAGAGATAAAGCTCTGATAGCTTTTTTATA 2796534 37 100.0 36 ..................................... TTTAAGCGGATTCTCCAAAAAATCAAAGACGAATGG 2796607 37 100.0 37 ..................................... GAAAAATATTGGGACACCCTACGTAACCTGGGATATG 2796681 37 100.0 37 ..................................... TACCCGCCCTCAAATGTTTCTGAGATGATCCCGGTGT 2796755 37 100.0 36 ..................................... ATACTCCTTCTCCCTTCTCCGGCTTTGTGTTCAGTC 2796828 37 100.0 36 ..................................... TTGAATGGGTTAGTTATAGGGCGTTCACCGTACATA 2796901 37 100.0 36 ..................................... ACCATTGTTTCGCAACCTGCCCGGAGTGGTAAAACT 2796974 37 100.0 36 ..................................... TTGTATTGTAGGTAAATGTACCTACGGAGGATCTAC 2797047 37 100.0 34 ..................................... AGTGTTGCTATACATTTTGGGAATGTATTGATTT 2797118 37 100.0 36 ..................................... AAATCTGATGTTGGGGGAGATGTGACCTGTTCTGAG 2797191 37 100.0 35 ..................................... ATTTTTAAGAGGTCCAAACCATGCCAAAAGTATCT 2797263 37 100.0 38 ..................................... TGTTTACTATTTGTGTTCTTACTTTCCCTCCAAAATTC 2797338 37 100.0 37 ..................................... ATAAGTCCACGATGAAAAAACGGGCTTGAAGGGATTT 2797412 37 100.0 36 ..................................... AAAAAGTATAAGGTATGATGTATCTACGAGATTGCA 2797485 37 100.0 34 ..................................... ATCTATTATCCCGAATTAAAAACTGTGCAGAAGC 2797556 37 100.0 37 ..................................... TAAGTGCGGCCTTTGTAGCCAGTAAAGCCCCTGCAAA 2797630 37 100.0 37 ..................................... TCCCCGAGTGCCCCGCCCAGAGGTTCCAGGAATTCAA 2797704 37 100.0 35 ..................................... TTGAAGCCGGTATAGGATGGGCTGAAGAAAATAAC 2797776 37 100.0 35 ..................................... GTATTTGGAGACATAACAGCCCGTAATACAGGCAT 2797848 37 100.0 35 ..................................... CGTAAACGGTGCATCAGGCTACACTCTTGAATGCG 2797920 37 100.0 35 ..................................... TTTTGTACCATCTGGTACTCGGTCATGAGCCCCAT 2797992 37 100.0 35 ..................................... TATGGATACTCCTTTCTTGAAACTTGCGGCGGGGA 2798064 37 100.0 36 ..................................... ATCATATTCATGATTTTCTATTACACACATCCTTAA 2798137 37 100.0 36 ..................................... TTCATACAGTCACCCCAAACCAACCAAGAATTTTTA 2798210 37 100.0 38 ..................................... TTGAGATAAAAGACTCTACTCAATTTGAAAACCGGCCA 2798285 37 100.0 35 ..................................... ATGGGAGTTGAAGCTGTTGCCGATGCCATGACCGG 2798357 37 100.0 36 ..................................... ACAATTTTGAAAAATTGCTTGTAATCCATATAAAAA 2798430 37 100.0 36 ..................................... TCCGGATTGTTAAGTGTTTTTGTGATTTCTTGTTTT 2798503 37 100.0 34 ..................................... TTCTGTTGTTCAATAGAATGGTAAGAAATTAAAT 2798574 37 100.0 34 ..................................... TTCTGTTGTTCAATAGAATGGTAAGAAATTAAAT 2798645 37 100.0 36 ..................................... GTAACCGAGTTTGAATTGTTGGTCAGGAAATCATAA 2798718 37 100.0 37 ..................................... TAATACCAACCGGTCGCACCTGGCATGTTAGGGAAGT 2798792 37 100.0 36 ..................................... CACAACAGCAATAATAAAATGAGTACCCGGAAACAA 2798865 37 100.0 36 ..................................... CACAACACATTATACATCATGGCAATAGTCATACAC 2798938 37 100.0 36 ..................................... CACAACACATTATACATCATGGCAATAGTCATACAC 2799011 37 100.0 35 ..................................... ACATTCTCGATGTCCAACTGTTCCGCCATTCTCCA 2799083 37 100.0 36 ..................................... ACCGTTGTCGCTCCTAACGGCTCCACACAATCAACA 2799156 37 100.0 37 ..................................... TGTCACTGTGTCGATCTGCAGGACTCCGTTTTTTCCT 2799230 37 100.0 36 ..................................... AATAGAGAATTTTTTGATCTGGCGCAAAGTTCTGAA 2799303 37 100.0 36 ..................................... TATAAAAGATATGAAAAATGCGGAGATGGCAGAAAG 2799376 37 100.0 37 ..................................... ATTGGTCTTCGGTCAAGGCTTGCTTTTTGAGAGCAGG 2799450 37 100.0 36 ..................................... TTCCCTGGGGATTATTATATCTGGATCTCGTGATCC 2799523 37 100.0 38 ..................................... GATACTGTATACATAGCATGTGAGGGAACTTCTAATAA 2799598 37 100.0 36 ..................................... TAATCCAGCAATCGCCCTCAAAAATATGATCAGTAT 2799671 37 100.0 34 ..................................... TAAGTATCAGCGTAAAGATCTGATATAGATTCTA 2799742 37 100.0 36 ..................................... AATTTGCATATAAACAATATAATCATTATTTCGTTT 2799815 37 97.3 34 ........................A............ AAAAAGCGTCCATGTCATCCACCCCTTAAAATTA 2799886 37 100.0 38 ..................................... CACTGAACTAAATCAGCTATCGGAAGATCAATTAAAAG 2799961 37 100.0 36 ..................................... TTGATAAGCTCCTCAATAAAGTCTCGGTAATCCTCA 2800034 37 100.0 35 ..................................... TAAGATTAAATCTTCATCTTCAGGTGCTAAAAAAG 2800106 37 97.3 37 ........................A............ TGAATGATATCCTAGAGATAGACGTAGACGGACGAAA 2800180 37 78.4 0 .....C..........A.......AGG....AA...A | ========== ====== ====== ====== ===================================== ======================================= ================== 76 37 99.6 36 GTCCGTGAGCAAAATCCACTAAAACAAGGATTGAAAC # Left flank : TCATAGCCTCCAGTAAAAACCACATAAAAGGAATCGTTGATGAAGTCCTGTTTCTGGAAGACGGAACTACAGCTCCCTTAGAATACAAATTTGCCGAATACAAGGACAAGATATTCAAGACATATAAAAACCAGTTGATCCTGCAAGCCCTTTTAATCCAGGAAAATTATAACATAGAAGTAAACAGGGGATACATCTGCTTCACTCGAAGCAACAACCTTGTCAAAGAAATCGAAATCAAAACTTCTGATTTTGACAAATCCCTGAAAATCATACAGGAAATCTTAGACGTAATGCACAAAGGCGTATATCCAAAAACAACAAGATCCTCAAGAAAGTGCATAGATTGCTGTTATAGAAATATTTGTGTTTGATGCTATTTTTCACGCCATATTTCTTCCCTATATAAAGGACTTGATAAATTACCATCAAGAATTTTGATGCCAAAAAAGAAGCTTTAATATACCTTATTTACCTAAAAAGAGGTAAAAACTTGCGGT # Right flank : ACCTATACTCTCATTTCAATTTTTTAGGGAAAAGCCGTCCGCCTCGCTTCGCTCCGCGGCCGGTGAGAGCGCCGGCACCCAAAAAAGCAATCCGAAAAAAAGCACCTTTCTTAGTCCACCAGTCACACAAACGCCGCTAGCCTGTCCTCCTTAGCGACCACTCTTCTCCCCGCCATCCCCCTCAAGCAGCCAGTACCACAACGGAACATACCTTATTTTCTTCCCTTCAACAAACTCCTCGTCAAAAAGGTCCGATGTGATGATAGTCCCTTCTTTCATTTTGAAGTTCTTCATCCCGGCAAGCAGGCCGTTTACCTCGCGTTCTTTTGTTTCCGGGTCGGACAAATTCGAGCAGACCTGTATCAGGCGGGTGGGTTTAAGTCCTTCCTTTGTTACAAAATCAACCTCTAAGCCCTTCCGGTCCTGCCAGTAGTATATTTCGTTTCCGGAGCGCAGGAGCTGGATGAAGACGAGGTTCTCGTATAATCTTCCGGTATCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGAGCAAAATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 2803924-2804181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 2803924 38 100.0 35 ...................................... CAAGACGTTGACCGATTCCCACGCAATGCAGTTTC 2803997 38 97.4 37 .................A.................... TTCAGGATCAACTGAAAACGCCTCAATATCTCTAAAC 2804072 38 100.0 35 ...................................... ATCAAAATTGGAAAAGATGTTAATAGAGAAATTGC 2804145 37 81.6 0 A................A.......-.G..GA.A.... | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 94.8 36 TGTCCGCGAGCAAAATCCACTAAAACAAGGATTGAAAC # Left flank : TTCTATGCTGCTGAAGAAGAGATTGCTATCAAAGTAAGAAAAGAAGGCGCACTAATAGCAACTGGTAACCTCGGAATGTCTGATTCGAGCCATATTAACATAGATATGGCAGATATTAGACCCGGTGGGACCACAGCAGGCGGTTATTCCCTGGAAGATGAAACATATGGGGATCTCTTCACGATGGACTGGCAAGATTCAACTGGCGACGTCAAAGAAGGCATATTCAAAGCAAATGTACCGGGAGCAAAAGCACATGGTGGATCATTTGCAATAATTTACACATACTACAATGGCGAAATATACGGAACAAAATACATTTACGAATGGAGAGAGTAATTCTCTACCATTCCTTTTTTCTTTTCTTTTAGATTTCCATAAAACTGAGTGGGCAGATCAGTCTCTTGACTTTTAAGAACAAAAAGCAATAGCATACGCTTTAGGGTTAATGAAAAGAGATAGAAATGTGGTCACAAGGTATGAAGTTTTGAGTACATCGG # Right flank : CACCTATACTCTCATTTCAATTTTTTAAGGAAAAGCCGTCCGCCTCGCTTCGCTCTGCGGCCGGTGAGAGCCCCGGTACCCAAAAAGCAATCCGAAAAAGGAACACAATTATATTCTTAATGGCAGGTAAACTGAGTTAACCACACGATGTTAATGAGAACCATTTTATCTATTTAGTCAGCTTTTCCACTATCAAAAGAAAATTTACTTTAGCAGTAGCTCCCATGAGTTGAAATGTAGGTTTAACATTGGGAATAATCGTCACAACTTCTCCTTCTAGATTATTCAAAAATTGCTCTAATCTCACCTGGTCCTTATCCATGTCGATGTCGAATCGATGTACTTTGTATTTTATAATAGTCATTATATCACCCAACTATGTTATTTTTATAAGTATTCCATTTTATTCAACCGCTCAGCAACATTAAATTTGTCATTTTTATATGCATTTGCCTCTTATTACTAACAATTATTGGTTTTTCAATTTCTATACAGGTAAA # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGCGAGCAAAATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 4 2805120-2805299 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2805120 37 100.0 34 ..................................... CCGGGTTAACAGCCGCAGCCGTGAAAGATGATCT 2805191 37 100.0 35 ..................................... TTGTGGGCGGTATCGATATTAGGGTTATGGATGTA 2805263 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTCCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTATATGCATTTGCCTCTTATTACTAACAATTATTGGTTTTTCAATTTCTATACAGGTAAAGTGAGGTGTGCAGATGCATTAAGCAAACCGGAATACTGGAGAGAATAAGAATCCAGTAAGCTTATAGGACCCCGGTATCAAGCTCTCGAAACCAAATTTTCCGCTCCCCGGCTTCGTATAAAAAAAGGTGTTGAGATGCTTTTATTCTCGTTTATTCTCTTATTCTTTTTTATTTTCCTGAAAAAGCCGTCCGCTTCGCTGCGCTCTGCGGTCTGTGAGAGCTCCGGTACCCAAAAAGCAGTCCGAAAAAACGCAGCTATTTCTTAGTCCGCCAGCCACACAAACGCCGCCATAATATCCTCCTCCCCGACCAACCCTGTGGCGTGTCCTTTTCCTCCCGTATCCCCAAACCATACTATGTCCGGTAACTGAGGAAAAAATCCACCTTAAAAGGGCTGAAACAAAAAATTATACACTTTGAGGTATGCATTTTTTCCTG # Right flank : CACCGGGTTTCTCGGCTTCTTCAACCTGATCCATGAAAGGTTGGAATACATCTCAAATCGATAAAACCTGGTTTTTTCTAAAGCATCGGAAGTCCTGGATACCAAATCCTCTTCGTTCCTGACCTGCCCATTGGAATACGAATAAATCAGAAAAACAGAGATCAGGATAATTATTACAAGAATTATCGTGAATCTACCTTAAAGACCGTTTTGTGTAATTTTTCTCATGTTCGCATTCTCTTTCTTTATTCACATTTTCTTTTTTAAAACATATGCAGCTCCCAACCCCGTCAGTAAGATTATCATGGCTACTGCCAGGTAGAACCATATGGATTGGGTTTCAGGGAGAGTATCTGTTTCTGCTGCCGCAGGAGTTTCTTTTGAAGTATTTTCCGGGCTTTCCAGAGGTGCCTGAACGTCTTCAACTGTAATGTTCTCATCCTGGCTTTCTTCATCCGTGATTATAGGGATTCTGCGGTGCCCGTCATGGGGTGGAACCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 5 3678131-3675722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================= ================== 3678130 37 100.0 38 ..................................... TCAGGGCCTGCTTCAAGTGGACCAGTCACTTTGATAAA 3678055 37 100.0 38 ..................................... CACAACGCCAAAAGCTGATGTAGGCACGAATTACCGGG 3677980 37 100.0 35 ..................................... AAGATGATGGAAGCAGGCTCATAGATGATGAAGGG 3677908 37 100.0 36 ..................................... AAAAACTTGGTCGATTGATCGAGGTAATAGAAACAA 3677835 37 100.0 137 ..................................... GCTTCGTCGATCGTCAAATACTTGGTAGTTTTCCCTATGCCTCTGTTTTTCCCCTTATACTTTACTAGTAAATGTCTGCCTTCGCCTAATACAGCTGATATCTGAGCCTGTATTTGGCTAGGGTTTTTATATTCTTT 3677661 37 100.0 37 ..................................... CCTTCCACCTTTGTCCGGGTCGCCTGCTTCAAGTCCC 3677587 37 100.0 36 ..................................... CTCGTTTCCGTTATCGATGAAGTCGCTGGTCATGGT 3677514 37 100.0 36 ..................................... ATCGTAATGCTCCAGCTATTTGTATTTCTCTCAGCC 3677441 37 100.0 35 ..................................... ATGAGGACCATAGCCATACATGCTCCAAGGGCTAT 3677369 37 100.0 37 ..................................... CTTATTCTCTCTCTCCCCTGTCGTATCACATGGCTTT 3677295 37 100.0 35 ..................................... TCAAATGAGCCCCGAATTGTCACAACACATATAGC 3677223 37 100.0 37 ..................................... TTGTACGTTCTCTTCTATTCGTGTCTTACATTTTTGT 3677149 37 100.0 36 ..................................... AGAAATTCAATTACATTGGTGTAAAGATTTCGCTGA 3677076 37 100.0 36 ..................................... AAAGTCTTCAAGTAGCTCTTTATCCCAGTTTCTAAA 3677003 37 100.0 37 ..................................... TTATATCACCGGTCCGGGGGTGAGAGTGATTCATTAG 3676929 37 100.0 37 ..................................... TCTGATATGTGTTTTGACGCGGGCGGGGTAAACTCGG 3676855 37 100.0 36 ..................................... CTGAACTGTTCCACTGGCTGGTGGCGCTGAGCTTGT 3676782 37 100.0 36 ..................................... TATGTTTTGGGCTATGGGCTGCCGTAACTGGACCTG 3676709 37 100.0 35 ..................................... AATGCTGTAGATATGGGAACGTTCCCGCCGTCTAG 3676637 37 100.0 36 ..................................... CGATACATCTTCCGGCACTTTCCAATATTGGAAAGG 3676564 37 100.0 38 ..................................... GTATACCTGATTCCAACCAAAACCGCCGCCGTGGCTGC 3676489 37 100.0 37 ..................................... TATTTGCATGATAGGTCATGAAATCAGGATGGTAAAA 3676415 37 100.0 34 ..................................... CTTTTGGCTGTAGTGTACATATAGTTTCCAATAC 3676344 37 100.0 36 ..................................... AAAAGTCGAAACCCGCTTATGCGGTTTTCTCTAAAT 3676271 37 100.0 36 ..................................... ATGAGACCATGAAAAACGCCGGGGTATCTGTGGAGG 3676198 37 100.0 36 ..................................... TATAATCTTTCAGTTTTTGGAATATTTACACCTACA 3676125 37 100.0 34 ..................................... CAGATAAATTTGCAGTTTCAACCCTAATAAAGCA 3676054 37 100.0 37 ..................................... CTGAAAAAACATAATCGAAAATTCCATTCTCCGCGCC 3675980 37 97.3 35 .......G............................. TTAAAGCACCCTCGCAATGCCTCCTGCCCGGTATC 3675908 37 100.0 38 ..................................... ACGATCTAGTCAAACCGAGACTCCCGCAGATGATGACC 3675833 37 100.0 38 ..................................... AAAATATCGAGGTAGGGCGCGGACATGTGGCGAGCGTT 3675758 37 94.6 0 ....A............................G... | ========== ====== ====== ====== ===================================== ========================================================================================================================================= ================== 32 37 99.7 40 GTCCGTGAGCAAAATCCACTAAAACAAGGATTGAAAC # Left flank : TTGTCAATGCAGGCAACCTTATAGAGAGATTAAAAAAAGCAAATCGGGAAGGTGTATTTGAAAAGAAGATGAGGGACTTTACGAAATACAAACTACTGATAATCGATGAAATGGGCTATCTTCCTTTTGATGAAGAAGGAGCACATTGTTTATTTCAGCTTATATCAAAACGTTATGAGAAAAGCTCAACTATCTTTACCTCAAACAAGTCTTATGGAGAATGGGGTGAAATATTCCAAGACCATGTAATAGCGGCGGCTGTACTTGATCGTATACTCCATCACTGCACAACAATCAACATCAAAGGAGAAAGCTACAGGCTTAAGGAGAGGAAAAGACAGGGCATAAAAACGGTAATTCCATACACCTAATTCTACAGAAGTTATTGAAAAATTAAGCAAACTTTATATCAAAAGGTGGGGAATTTTAAACCGTCCGAAGTGGGGAAAAGTAAACTGCCGTTGACAGCGCAAGCTGGAACCTGAAAAGCCATTCAGGAG # Right flank : ACATGCATCCTCATTCTAATTTTTCTGAAAAAGCCGTCCGCCTCGCTTCGCTCTTCGGCCGGTGAGAACTCCGGTACCCGAAAAGCAATCCAAAAAAACGCACTGATTTCTCCAGTCCGCCAGTTACACAACCGCCGCCAGCACATCCTCATGCCCGATCATCCTGCTGACGTGCCCTTTTCCTCTCGTATCTTCAAACTGAACTATGCACCAAGATCTGAAGAAAAAATACAGCCTGAGGTAGTGGATTCAAAACGTCAATGGATATACGAAAAAATTAACCATCCCCAGAAATATCAGGACCTCCCTCATCCACCAGGGAAAGAACTGGTCAGCGGTGAATCTGCGCTTTACCTGGGCCGTCACAATACCGCATCGAGTTGGTTAATACGGATTTATCCGAGATTCAGTTTGCCCATCGTTTCCTTATTCCTGCTACTCAAGGAGAAAAGTGAGAAGAGGCCTTGCGGGAATGGTATATCAGCAGAGCCAGAGAAAAA # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGAGCAAAATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 6 3688684-3680371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3688683 37 100.0 37 ..................................... AAATCACTCCAAGTAATAGGGAACCTGGCTCATGACA 3688609 37 100.0 35 ..................................... CGATTGTCCTGATTTTTTTGATCCTGACGACGAGG 3688537 37 100.0 36 ..................................... ACACCTCATAAAGGATGATGATTATTTACAAATTCG 3688464 37 100.0 37 ..................................... AAAAATTAAAGGGCCGGGATTCACTCTTCTTTGAGTT 3688390 37 100.0 36 ..................................... TTTACGCTTCCGACTACCTGTGCCTGGCGGATAACA 3688317 37 100.0 37 ..................................... AAATATACTGAATCGGGTCCCCACGTTTCATGATCTG 3688243 37 100.0 36 ..................................... TTGCGCTGCCGGTTGTGATTGTGTAGGTGTTGCCGG 3688170 37 100.0 36 ..................................... TTCTTCTTCTTCTTGGAAATCGGTATCGCATTTTTC 3688097 37 100.0 36 ..................................... TATGATCCTGTAACTGAGCCCATTTTTGTGTCGTAT 3688024 37 100.0 37 ..................................... TCATTGGTAGGACGATAGAACTACTCGAAAAATACAC 3687950 37 100.0 38 ..................................... GATCAAACTGAAATATAGTCGGTCGATTTGTTCCTCGG 3687875 37 100.0 35 ..................................... GTGTCCCGGTGGCTTTTGTTCCTGATATGCTTTCG 3687803 37 100.0 38 ..................................... CGAGCTTGATGCTTTCGGCGGTCCGGCCGTCCGTGTCT 3687728 37 100.0 36 ..................................... ATTAATAATGTCTGACGTAACTAAACCCAAAGAAAA 3687655 37 100.0 36 ..................................... AGGAGTGTGGGAAAGATGGTCAGCAAAGAAGAATTA 3687582 37 100.0 36 ..................................... ACCACCCAACCACGGATAAAATTAAAGCAGATTCCA 3687509 37 100.0 38 ..................................... TGATGTAACATAACGTAAATACCGCCGCCACTAAACAA 3687434 37 100.0 35 ..................................... GTCTTGGTCAACTGTTCACCGAACGCAACAATGTT 3687362 37 100.0 35 ..................................... TTTCAAAAACGAAAAAAAACAAAAAAAAGCACCAC 3687290 37 100.0 36 ..................................... CAAACCCGCTTTTTGCTGCTGGTATGAATGGGGGTT 3687217 37 100.0 37 ..................................... ATAGCTGTTGTTTGTGGAACTGCTGTAATCTATCCAG 3687143 37 100.0 34 ..................................... ATTATGTCCTTGGTAATTACGTGGACTCCATGGA 3687072 37 100.0 36 ..................................... AAGACGTGCTCGGGATAGTTGACCCCCGGGCAATTA 3686999 37 100.0 37 ..................................... AAAAAAGAAAAAAGTAAATTAATACTTTATAATTTGA 3686925 37 100.0 36 ..................................... AATATTCAATGGATGTTTTTGCAATCCCTCCGATTA 3686852 37 100.0 38 ..................................... CAGCAGTTCGGACATATTAGCCTATTACTACGCAACCG 3686777 37 100.0 40 ..................................... TTTCGGGGGTTTCCAGGATAAAGACCATGGCATGAGATAC 3686700 37 100.0 36 ..................................... TCAGGGCGTTCCGGTCCAGTTTGACCCCCTGTTTTT 3686627 37 100.0 38 ..................................... CACGGGGGAAGAGGTTATTAGGATTGCAAAGGGGATGT 3686552 37 100.0 37 ..................................... ATACTGTTTTTGTCAGCGTTGATAAAGGGGCTCTCGA 3686478 37 100.0 37 ..................................... ATTTTCCTTATTGTTTCCGGACTCATAAGCCGCTCGT 3686404 37 100.0 36 ..................................... CCGTGTCCACTGAACTTAGAAACTTTGTTTTTTCTA 3686331 37 100.0 38 ..................................... TTTCTTGATAGAAAGCCCATTAGGAATCATTACAGCCG 3686256 37 100.0 36 ..................................... CCTGTCTCCGGAGTTCGTCTGAGCTTTCGACTTCTA 3686183 37 100.0 37 ..................................... ATTGGTTTTATTATCACTTGGTAATGTTTAGGTTTTA 3686109 37 100.0 36 ..................................... CCACCCCCACCGATGTACCATGCACATTATCAGGAA 3686036 37 100.0 34 ..................................... TTATGACCGTGCAGGAATACGTATCCCCATCAGT 3685965 37 100.0 38 ..................................... TATGCCCATCTTTGATCAAAAAACCATCAAATTTTCGT 3685890 37 100.0 35 ..................................... ATTAACATCAAAACCGACTGCTTTCAATCGGTTTT 3685818 37 100.0 37 ..................................... ACCTCACCTCATGTAAAAGTCGGCACGGTACTAGCAA 3685744 37 100.0 36 ..................................... CACTTTGCCGGGTTCCATCTGTCGCCGCGTATTCTT 3685671 37 100.0 36 ..................................... TCCCCTATACTCAATAAAATATAAGGTGAGGAAAAT 3685598 37 100.0 37 ..................................... TCTCCACGCCTTCCAGCGGTACTTCGTATTCTGTCCC 3685524 37 100.0 37 ..................................... TCCATTCGTTTTGTTCAGGTTCAATTGTAATTTGTTT 3685450 37 100.0 36 ..................................... TCTTAGTTGGGAAACTGACCCTAAATTGTATGTGAA 3685377 37 100.0 36 ..................................... ATCTATTATCCCTAATTAAAAACTGTGCAGAAGCCC 3685304 37 100.0 36 ..................................... CATGAGATTGTTTTCAATTTCATTATTTTTCGATAT 3685231 37 100.0 36 ..................................... TTTGTTATGTTTTCATTGGTATCTAAACTCATTGTT 3685158 37 100.0 37 ..................................... ATATAGACTACCGGGTTTGTGATTCCGTCGGTGTCCT 3685084 37 100.0 35 ..................................... CTCTATTGTATGTACTTTTCAATATCTCTTTTTCA 3685012 37 100.0 38 ..................................... CTGTCACAAAGGCGTAGAACAGTTCAGTGACGGTCATT 3684937 37 100.0 38 ..................................... TATGAATGTCTCATAATGACGTATGGGTAATGTATCGT 3684862 37 100.0 36 ..................................... ACCTGCCTCCATGCCATCCGTCCGATCTCCCAAACG 3684789 37 100.0 38 ..................................... CATGTCCTTTGCTGTTCATCACTGCAATGAGAGCAGGT 3684714 37 100.0 35 ..................................... ATCCGACGCTCAACACCTGGCAGCCCTCTTGATCT 3684642 37 100.0 37 ..................................... CCGCAATGCCTGACCGTAGTATGGACTTGCAAACCGG 3684568 37 100.0 36 ..................................... TGAAATTAATCCGGATGGGTGGAACTATCTTGATTC 3684495 37 100.0 36 ..................................... TGGTGGACATGGACTTCTGAGAAGCCCTTCATAATC 3684422 37 100.0 35 ..................................... TTATGGGCTCGGGCAAATCCACAAAAGCCCCTTAC 3684350 37 100.0 37 ..................................... CCTGTCTTCGGAGTTCGTCTGAGCCTTCGACTTCTAT 3684276 37 100.0 39 ..................................... CTCGTGTACTTCGTCATGGTTTCAAGGATTGCGGCTTCA 3684200 37 100.0 35 ..................................... CTTGCTAATTTCAAAGAGTACACTGATTATGAATC 3684128 37 100.0 36 ..................................... CCATAGTTCTCAGGGAGTTGAGCCGTAGCTATCCTG 3684055 37 100.0 36 ..................................... CGGGATGATAGAGGCATAAAAATAATCGGAGTTAGA 3683982 37 100.0 36 ..................................... TTTTTTTGTGGTCTTGATATTTCAGTTTTCGACGTT 3683909 37 100.0 35 ..................................... GCCATGTTTGCGACTCCGTAGTTTTGTCTTGTTAC 3683837 37 100.0 36 ..................................... TTTATCACGGCTACTTTTCCCCACGGGATGCCTGCA 3683764 37 100.0 34 ..................................... TCCTGTCGGTTTTTGTTATGCCCGTGAATGATTC 3683693 37 100.0 34 ..................................... GAAGAGAGACAGAACCGGTAGAGAGAAGATACAA 3683622 37 100.0 39 ..................................... TAGCCTGAGCGATCCCGGGGAAACTGCCGGGGACGTCTG 3683546 37 100.0 35 ..................................... ATCAAGAGTTGAATCGGTATACGTTTCGACATCCT 3683474 37 100.0 36 ..................................... TTGCCGGGGTCCTGGCTATGTGCTCCGGAGTCCTGG 3683401 37 100.0 36 ..................................... CCACAGCATTACATTCGCTCAACCCCAAAACGGCTT 3683328 37 100.0 35 ..................................... TGTAAGCTACAGGCTGCCCTGGTCGCTGAACATAA 3683256 37 100.0 38 ..................................... AAATTAACAACTACGGAGGACGGACTAAAAATATGTAT 3683181 37 100.0 38 ..................................... AAATGTCCTGCTGTCGTATACTAAAATCGAAGGATTAT 3683106 37 100.0 38 ..................................... ACGATCAAAGACAGAATCCTGATTAATTTGGTCGAATT 3683031 37 100.0 35 ..................................... ACCCTGAAAAAACAGGTTAACGTTCTCGATCTGGA 3682959 37 100.0 36 ..................................... GCAGTTGTCCGCCTTTCAGCAGGCAAATTAGCAACT 3682886 37 100.0 36 ..................................... CAGGCAGTCAAAAAGCAACCCTCTCATTAATGGCAC 3682813 37 100.0 36 ..................................... CCTATCTCCGGGTCCTGGTATTCACAGAAGCAAAGC 3682740 37 100.0 35 ..................................... TACTTATGCAATTATGGTGAAATGCAAAACATTAA 3682668 37 100.0 36 ..................................... TTCCACCCTGCACGATGTCCGGGCAGATCACGAAGT 3682595 37 100.0 35 ..................................... GAATCTTCGGATGTGAACTCTGAGAGTTCCCCAGT 3682523 37 100.0 35 ..................................... TTATCGTCATGCCGGTATTTGACCCGGCGTTAGAT 3682451 37 100.0 34 ..................................... CTATTCATACAATGCATACAACAAATCCAGCGAC 3682380 37 100.0 37 ..................................... ACCGTTGAAGAGTTTGATAAATTTTTAAATGGTATGT 3682306 37 100.0 36 ..................................... ACTCCTAATGTGGCATCTGCTGTGCCTGTGTAGGCA 3682233 37 100.0 35 ..................................... CCTAATAATATACGTGTTTTTTTCTCGTTTTTCGT 3682161 37 100.0 37 ..................................... TATCGAAGTCTGGGTCCAGTATGTTTGCCAGGTGGCT 3682087 37 100.0 38 ..................................... GTTTTGCGGCGGCGTTGGCTGCTGTCTGTGTTGGTGGT 3682012 37 100.0 36 ..................................... TGATTGTAATATAAAGCAGTTGGCTTTATTGAGCTT 3681939 37 100.0 36 ..................................... ATAGTGGCTTTGGTTTTTCTGAGCGTGTGAACTGCC 3681866 37 100.0 37 ..................................... TTTTCGGAGGTTGGCGGGGTTGAATTTGTTGTGGAAG 3681792 37 100.0 36 ..................................... AAATACCGAGACATTGCAATTTCAATGTTTTGTATT 3681719 37 100.0 37 ..................................... AGCAATATCGTAGGGGAAAGGGATTCTAGGATGTATT 3681645 37 100.0 37 ..................................... ACCGGCGCTCCCTGATGTCCGGAACCAGGTCCCAGGG 3681571 37 100.0 35 ..................................... AATCTGCTATATTGGGAGTTAGACCTATGAGCAGG 3681499 37 100.0 36 ..................................... CGATTCAATGTATTCTACTTACGGCCCGGCTTTCTT 3681426 37 100.0 37 ..................................... TACCTAAAACGGCAACCGAAATATAACGGGGGTAAAT 3681352 37 100.0 35 ..................................... TTTGGTCTTGTTTGCTGTTTGTTATGAGTGGGAAG 3681280 37 100.0 34 ..................................... TCGATTGCGGTCTTTTTCGGGACAATGTGGGTAT 3681209 37 100.0 38 ..................................... ACTCTGTGTGCTCTTTGATCTGTTCAATTTTCCTTATT 3681134 37 100.0 35 ..................................... TGTAGTCACCGAAGCCGGTTATTGATTCCTGATAT 3681062 37 100.0 34 ..................................... ATATTATGTGACCATTTTAAAAGATATGGAAGTG 3680991 37 100.0 36 ..................................... AAAAGAGAATTGCAGCATTTGGAAACTTTTGTCCTG 3680918 37 100.0 36 ..................................... TATTAATTATTGTATTTTCTGCTGGATGTATTTCAG 3680845 37 100.0 37 ..................................... TCTGTTGCAAAGCTTCCGGGCGTCACACCTTTGGGGA 3680771 37 100.0 35 ..................................... TAGTTTTCGGCGCATCTGATGACCTGATGGAGTTC 3680699 37 100.0 37 ..................................... CTTTTTCCACTCCATGCTTAATATATCTGTTATCCCG 3680625 37 100.0 36 ..................................... ATTCATCGTGGAAACGCTCGCAGATTTTGTTCAGAA 3680552 37 100.0 36 ..................................... CTCAACTCATCGAAAAAACCGAAATATTCAGCAACG 3680479 37 100.0 35 ..................................... TCATGGCGGGGCTCTCAGCAGGACAGAAGACAACA 3680407 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 114 37 100.0 36 GTCCGTGAGCAAAATCCACTAAAACAAGGATTGAAAC # Left flank : TCATAGCCTCCAGTAAAAACCACATAAAAGGAATCGTTGATGAAGTCCTGTTTCTGGAAGACGGAACTGCAGCTCCCTTAGAGTACAAATTTGCCGAATACAAGGACAAGATATTCAAGACATATAAAAACCAGTTGATCCTGCAAGCCCTTTTAATCCAGGAAAACTATAACATAGAAGTAAACAGGGGATACATCTGCTTCACTCGAAGCAACAACCTGGTCAAAGAAATTGCCATTAAACCTTCCGATTTTGACAAATCCCTGAAAATAATACAGGAAATCTTAGACGTAATGAATAAAGGCGTGTATCCAAAAACAACAAGATCCTCAAGAAAATGCATAGATTGCTGTTATAGAAATATTTGTGTTTGATGCTATTTTTCATGCCACTTTTCTTCCCTATATAAAGGATTTGATAAATTACCATCAAGAATTTTGATGCCAAAAAAGAAGGTTTAATATACCTTATTTACCTAAAAAGAGGTAAAAACTTGCGGT # Right flank : TTCGGCGCTGTCAACGGCGGTTAAGAATTCCCCATTTTCGGCGGTTTAAAATTCCCCAATTCACAATCCTTGAGAAAAGTTCGAGGATTGTGGATCATGCTGAAAATGGAGGATTGGTTAGTGATAAGAGATTATAATTCACGAGGCTTGAACATAAGTGAAATCGCCAGAAAAACAGGACATGATCGGAAAACTGTGAGGAAATATCTCAACAAGAAGACACCTCTTGAACCCCAAAAACGTCCGACAAGACCGAGCAAACTCGATTCCTTCAAACCTCACATACTCAAAAAGCTTAGTGAATCCCCCTATACCGCAGCTCGCCTCTTTCGCGAAATCAAGGAAATGGGCTATGAAGGTGGGGAGACCATCGTTAAGGATTTTATAAGACAGATCAGACCTAAACAGGGAGTAGATGCGGTACTCCGCTATGAGACAAAAGCTGGTGTCCAATCCCAGGTTGATTGGGGAGAATTAGGAACAGTTGAATTCGATGGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGAGCAAAATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 7 3705177-3702264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3705176 37 100.0 35 ..................................... AAATTTTTGTTGGATCATGCAATCTCATTAGTGCC 3705104 37 100.0 38 ..................................... ATAACTTATTGGTCTGAATCCTCTCAAGGCTTCCCCCT 3705029 37 100.0 36 ..................................... TGACATATTCATTGTCTTCCGTCCCACATTTAGGAC 3704956 37 100.0 37 ..................................... TTAGATTTTAATTGTTTTTTATTTGATAAGCCCCTGT 3704882 37 100.0 33 ..................................... AATATAACAGAAAAGAACAAAATTGGCACCAAT C [3704881] 3704811 37 100.0 42 ..................................... CAAAACAAACAATCATCTTGCCTTTGCCATATCCATTGCCTT C [3704810] 3704731 37 100.0 35 ..................................... TTACATTCCTCGCATTACTTTTCCTTGCCTCTTCT 3704659 37 100.0 36 ..................................... TTTACTTTTCGTATTGCCTGGGCTAAGCCAAATCGA 3704586 37 100.0 37 ..................................... TTTTAGAACCGAGACTGCTTCTTTTTCGGACTCGCCA 3704512 37 100.0 35 ..................................... ACGTAAAGAGCGATTTTAAAGATGTCTTTCGGTCC 3704440 37 100.0 36 ..................................... ATTTTGTTTTTTTGTTTTCAATGCCAGAAAGTAACT 3704367 37 100.0 40 ..................................... ATCACCTCTTCAGGTGACTGTTGGGATTCAGTCACATTTT 3704290 37 100.0 34 ..................................... CCGTGATGCCCGTATCCTTTGCTGAAGTATGTGG 3704219 37 100.0 38 ..................................... ACAACTATTACATAATAGTAATATCTGTCAATCCTCCC 3704144 37 100.0 37 ..................................... TGTCGCTTGTTTAAGAAGCTCTTGTGCATCTTCCTTG 3704070 37 100.0 36 ..................................... AACGCAATCTATAGCCAGTAATTAAAGAAGGAAAAG 3703997 37 100.0 35 ..................................... ACGAATTGAGTACATTAAACACGCCGAAGAGGATA 3703925 37 100.0 36 ..................................... CCACTTGCAGATATACATACTCCGCTCGCCACCAAA 3703852 37 100.0 36 ..................................... ATTATAACCAAGAGGCCACAAGAGATTGCTTCCTTA 3703779 37 100.0 36 ..................................... CGAGGATACCAAGAACAAAGCACCCATAACTACGAC A [3703778] 3703705 37 100.0 40 ..................................... GCCTATATACCCTTCTTCATTTACGACGAGTTCTGCCTCA 3703628 37 100.0 36 ..................................... TAATAATTTAAAATTGTGATAGATTAATTATTTATC 3703555 37 100.0 35 ..................................... GCTTAAGCCACACAATTGGTGGCGAGGTTTTCGTC 3703483 37 100.0 39 ..................................... ACTTCTCACCTTTCCTTAATCTACTTCTATCATCATGAT 3703407 37 100.0 36 ..................................... TAATTTGGGGGGGTTCATTTCTTAACTCCTTTATGA 3703334 37 100.0 36 ..................................... TACCTGTATTGTTACAGGTTGCGGATCAGGTCCATT 3703261 37 100.0 36 ..................................... TACCTGTATTGTTACAGGTTGCGGATCAGGTCCATT 3703188 37 100.0 34 ..................................... TAACAAAGCTTCCTGCTGTATTTCCAGCCCTTCT 3703117 37 100.0 36 ..................................... CCAGGGTGGCAGAGCGGTTTTCTGTCGCATTCAAGG A [3703116] 3703043 37 100.0 37 ..................................... TAATAAAAGTATAGGGTAATATTTCATGCTTTTCCTC 3702969 37 100.0 35 ..................................... TGCTCATCCACCCTGGGACTGTCCTGCAACCATCT 3702897 37 100.0 37 ..................................... AATAAATATCCATCATCAGTCATCGGAACAAATTCCG G [3702895] 3702822 37 100.0 38 ..................................... TTACTATTTTTATTGTGCAGTAACCCCTTCACTGCACA 3702747 37 100.0 36 ..................................... CATAAGCAGAAGTGCAAGTATGGCAACTATTACCAA 3702674 37 100.0 37 ..................................... GTCTAAAACCATTTATACATGTTTTTCTTATTCGTTT 3702600 37 100.0 37 ..................................... GCTACCTTTCCTATTAGTAGTCGGTCTTGGTTATGAT A [3702599] 3702525 37 100.0 35 ..................................... ACTCAAAAAACCCATAGGGGGCATCATGTTTTGCA 3702453 37 100.0 36 ..................................... AATTTTATCGTAAATTCTTCGAATGGTGTATATATA 3702380 37 100.0 43 ..................................... TCTAAATGCCATTTTTTGTTCATCATATCTACACACTTTTCGA 3702300 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 40 37 100.0 37 GTTGCAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : GTGCTGTATGTTGATGTCGTTTTTGCTCTATCTTTGAAAGTCAAGTCAGAGGGGAAATTGAAGCGATGGCTTCTGAATACGATTGATCTTTATGAAATAATTTTTATTGCATGTGAATTCAAAAAATATGTCAAGGTACTGCGGCTGTAAGGGTGTCATCTGGAGAACTCCTTAAAAAATGGTCTCAATTTCCAGTTTCCAGACCCTCAAGGTACGAAATTCAGTTTCATAATCAATAGGCTTGAATGTACACAAAATGAACAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCTACTCAACGTACATAATTGTACATTATTAAAATATAATATCAACATCAATCGGTTCATTTTAGAAAAATTAATATACCGCTGATCTTTATATACCATAGTGTAACAGGGAGATCAGCGGAAAATGCCTAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAACAAAGGCATAATAGGGCTTTTTGAGACCCT # Right flank : CAGCACAAGCTCCTCATCCCCCTCTGGAAATACCAGTTGCAAAACAGCTTCCAGCATTCTTTTGAAGAATAAATCCGGAGAAACGAGAAGAAAACCGAATAACTGAATAATCAGCTTCCCGAGAGCCCCACTGTTGAATTTTCTTTGGAAGTCGCTTATGTTCCATCCTCCAAGCCCTGAAACTCGATTATAGAGCCTCTCAGAGAGCCATTTGAAAATAAGATAAAGAACATAGGTTTTGGCTGGTTTAACAGGGCTTTTTCTCCCCCTTTAGAAGCCTTCTGGATACTCTGAAAACCCCTTTCTGTATCCGTCCTTTAGTCTGTATTCATCCTAATAACAAAGCGGTACATATCGTTTTTATAGCTTTTCTTATGCCGATCTGGTAATAGGCAAAAGCTTATATCCTCCCCCTGCGAATAGAAGATTATAGAAAAAAATGGGAAAAGTAATGGGAGTGTGGAATCAAATGACCAAAGGAACATTCGGGAAAACCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 8 3718686-3717699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3718685 37 100.0 35 ..................................... TATGCCCTTCGTACAAGACCAGACCCAAAATATTT 3718613 37 100.0 34 ..................................... TTTATTTCCTCATCAACGGAAACTTCTATTCCGG 3718542 37 100.0 36 ..................................... TCTTTAATCTGAAAAAAGAATTTTGTGGAACCCAAA 3718469 37 100.0 35 ..................................... ACTAAATAAGGTTGCCCGCTACTGATAGCCATTTG 3718397 37 100.0 35 ..................................... CTCCTCCGAACGCGGGGAAGAAGCAAATTCCTCCA 3718325 37 100.0 34 ..................................... AAATTTCTGTCCCTTCTTCCATGTTTAGTGATTT 3718254 37 100.0 34 ..................................... ATAAATTTCTTTGCCGTCCCTAAGAACTACCAGA 3718183 37 100.0 39 ..................................... CATTCGTCTTGATAATCTTGCTTTACTCACATAGCTCAA 3718107 37 100.0 36 ..................................... TATATTCATACCCTACCACAAAAACCGCAGACAGTA 3718034 37 100.0 40 ..................................... CTCGGTGTATTTTGATTCATCAGAGACGTCCAAATAGACA 3717957 37 100.0 37 ..................................... ATGTAAAGTATAACAAGATGTCATCTATATGGACAAG 3717883 37 100.0 35 ..................................... TTCTAGAACCAAACGGTTCCAGTCATCTCTCTCTT 3717811 37 100.0 39 ..................................... TATTTTTTAAAAGTGGCAGAGTAAACATGTAATAGCCAA 3717735 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.8 36 GTTGCAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : TCCACAGCAATGGGCAGAGGCACCGTCCGAAAAATCCGCGTATACCGGGACAACTGAATCTCCCTTCCAGCTCTTTCTCCCCACTTTTTTGCAAAAATCCGATTTTGCACCATCAAATCTACAAATTTTCAGTAACTCAGCCGCCAGTAAACCTGTCTTCAAACCCAAACCCCAAAAATCACAAAGGAGTTTTCATTTCCGGACCCTCGAGGTGCGAAATTCAGTTTCAACATCAATAGGCTTGAATATACACAAAATGAACAGGTTGATTTCCGCGGATCTACCCCAAGTTTCTAAAGAAATTCACCCCAATGTACATAATTGTACATTCTTAGAATATAATATCAACATCAGCCAGTTCATTTTCGAAAAATTAATATGCCGCTGATCTTTATATACTATAGTGTAACAGGGAGATCAGCGGAAATTGCCAAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAATAAAGGCTTAATAGGGCTTTTTGAAACCCT # Right flank : CTTAAACGTGGATAAAGCAAGTATAAAAACAACAACTTTTTTTATATTTTTTCTGATTTTATATCTCAAAATTTCTGAAAATATTTAGAAATGTTTAAATATTCTATAACTAAACAATTCCATAATGTCTAAAAGTGACACCAATTCTGATTATCTTTTTCTGAAAATAGGAGCTCTGCTGCATGACATAGGGCATGTTGTGCCGGCTCCTGAAGGTGAGGCGAAAGGGCATGCTGAGAGGGGATTTGAGTTTCTCAGCTCGTTTGCGAACACCGAAGGCTTTTCTGCGTTTGCGAAGTATCACCATGCCCGATCGGTTGATGAAATTGTGGAGGAGGGGCTGAGCCAAAAATCCAGGAACCTTTTATGGATGGTGAGGGAAGCTTCCAGGCTTTCTTCAGGTAATGACGGTAGTGATGGAGAAGATGCCGCTGGAAAGCACCTTTTGAGGTCTGTTTTTTCGGGGATCTCGGGGATCAAGGAGGAGAAGGAGGGTAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 9 3722723-3721596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3722722 37 100.0 38 ..................................... TGAAACAGGTCTTTATAATCATTCCCATTATAATCGAG 3722647 37 100.0 34 ..................................... TATATTCGGCAATCCATCCGACAATTTTCTCGTC 3722576 37 100.0 36 ..................................... TGATGTCTTTCATGGCATCGACGACTTTATCCTGCA 3722503 37 100.0 35 ..................................... TTTTTTAGAGCTTTTGGCGTGAAGTCATATTCACT 3722431 37 100.0 36 ..................................... TTCTGCCCATTCTTTAACACCAGGCACGAATAAAAA 3722358 37 100.0 34 ..................................... TTTAGTGATTATTGTGATTACATCGTTGTCCAAA 3722287 37 100.0 35 ..................................... GATATTGTACCTCCGCATATCCCCATGCTTTTTCT 3722215 37 100.0 36 ..................................... TGTAAAACTTTGGAAGCATCAAAAATCTTTTTCTCT 3722142 37 100.0 36 ..................................... CAATTTATCATCCTCTTTTTCTCTTTCTTTTTTGTT 3722069 37 100.0 37 ..................................... TATGTAACCGATAGCGTCTATCTCTACCGGTTCTAAT 3721995 37 100.0 35 ..................................... GCCTGATCCCCTGCGCTGTAAGACTTCAAAGTTCT 3721923 37 100.0 34 ..................................... TTTAATCTAATATCCTGAGCCATACTCCACTCCA 3721852 37 100.0 35 ..................................... AAACTCTCACAAGGAAAGAATCCTCTGCTTTTTTA 3721780 37 100.0 38 ..................................... TTCTAGCTCCTTGTGCACCCTTCCCATTGGGTGCCAAT 3721705 37 100.0 36 ..................................... CGTATTAAGTGACATTTTTTAGACCTCTCTCAACAC 3721632 37 91.9 0 ...............................CA.T.. | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 99.5 36 GTTGCAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : CTTTTCCTTATGCCTCCCCGTGCAAATATAGCGTCTTTCGATCAATTCGATGCGGAATCGAACAAACGGCTTCCGAATGCGATTTTCCTTCATGGAATAATCTAAATTGCCTATGAATTCAAAAAATATTCCAGGGTAATGCAGCCGTCAGGGTGTCATCCGGAGAACTCTTTAAAAAATGCTCTCAATTTCCAGTTTCCGGAACCTCAAGGTGCGAAATTCAGTTTCAACATCAATAGGCTTGAATGTACACAAAATGAACAGGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCACCCCAACGTACACAATTGTACATTGTTAAAATATAATATCAACATCAGTCAGTTCTTTTTCGAAAAATTAATATGCCGCTGATCCTTATATACTATAGTGTAACAGGGAGATCAGCGGAAATTGCCAAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAACAAAGGCTTAATAGGGCTTTTTGAAACCCT # Right flank : GAAAAAAATGTCCTCACCATAGTATACTACTAACGACTCATGCCGCAAAGCAGCTCCAACATGCGGCAAGTCTGATTTTTTTCTCAAAAACTCTCTTTTGTCCGGCTGTATAATCTTAAAAAATTAACTCTGTTTTTTCAGACTAAAAAGCTGTGCTTCCGAAGCATAAGATAGGTTATCGAATCGTTGCGTATGCTATCGAATTCTTCGTCACCTGGGACATCAGGAGCAGGAGATGATTGGTGTTTAACCAATTAAAAAAGGAGGAGCGATGTGATATCCTGCAAACATGTAAGAGAGTCGCAGTTGAGATTTAAGAAATTTTGGGACGGGATTGTTGAGAAGCAGCCGGAAGGCCGGAAGAGGGTGTTGAAGCGTACGGGGACTTTTTGTAAGATCTGCTGGAGGGTTGTGCTATGGGCGAAGATTGTCGTCATCGCAGTCAAGCTGTTGCAGATCTCCAATTGAAGCTGTACCGGAAAGCGAGCAGCAGGAAGGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 10 3726179-3725482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009505.1 Methanosarcina sp. MTP4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 3726178 37 100.0 36 ..................................... CAATTTCCTGTTCGATCTTAGTAATATCGTTTGTAA 3726105 37 100.0 37 ..................................... ATACCCCCCACTGCTCAAGCGTCGGAACGTTCATAGC 3726031 37 100.0 36 ..................................... TTAGATCAGCTACGGTTTTCATGTTCTGTCAACTCC 3725958 37 100.0 37 ..................................... TCAGTTTCCCTGACCATCTCCCTTCGCTTCTGCCGTG 3725884 37 100.0 37 ..................................... GTACTACATTTGCCCTATTAGTTAATGCCTTACTCAA 3725810 37 100.0 37 ..................................... CGAAGCAAGGAAAGAGGCAATAAATGAAATCTTACGA 3725736 37 100.0 37 ..................................... AAACACCTCCTTATCATACTCAATTCCAACTCTCTCC 3725662 37 100.0 107 ..................................... TTTCTTCATATCGGTGTCTACTACTCCAACTTCAAGTTGCAAAACAGCTTCCAGCAAAAAAGGATTGAAACTTTTTTGTTTCCATTGGAAACAATGGGGCGGGGGTG 3725518 37 78.4 0 ........T..T..C...........G.....TC.CT | ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 9 37 97.6 46 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AAAGTATGATGAGAGGGTTAGTAGAGAAATTCAACAAAGTGAAACTAAACTCCCCGAAATAATGCTCAATGCTATTTTACAAACTGAAGAAGGTAAAGAACTTTTGGCTTCTTTGTGTAAAGCAGATTTTGTGAAAAAACAAGAAAAATCTAAAAATCCTATGAATCAAACCGAAATCCTCAAACAAACTGAGTGAGTAACTCACAAACTAAGGCTCCAAAAATTCCAGATTTATCGGCACAAAAAACGATTCTAGAAATTCTACACTGTACAAAAAAATAAATCATATCTTCAAGCGTTAAACGTTTTAGTTTGGTAGAATCTTAAATCCAAAAAAATATCTCAGAAAGCTTTCCTACAAAGCCACTTTTCCCTCACCCACCTCACACCCTTCAAATCACTCCGTCCACCCGGCCAATCTTCTCTTAATCTCCCCCTTCTCTTCCTTCGTGAAAGCCAGCCCCTGATAATGCCGCATAGAAGTAAGCGGATCATGCCCC # Right flank : ACAAAAGAACAAGAGATTTTACAGAAAAAACTCAAATGCAAGGTAGTTTCAACAAAAGTAAATGAAGATGAAAACAGGCTAAAATGTGAAAAAATAATAGTAGAGAGATCAAGAACCCTTTTTGCTGAAGTAGGTAGCGTATATTCTACCTTCATCAGTAAGCCACCAGATCTTCACGCTGCTTTTCCCTAATCCTGACGAGTTTTTAAGGGCACCTTTTTTACTCATGAGAAGCCCGTCTGCTTCCAGCATCTGGAGTTTATTGGTGATAGTCTGTGATGTCACTTTCAGTCCACCGGCTATCTCTCGATTTATGAATTTCTTCAACTCGTAATCACTGCATTCTTCTACGGGTTTTTTCAACTTTTTGTGCTCGTCCAGAAGGTACGATAGTATTTTCTTCGCCTGGTCTCCTATGTCGTAAAAGTAGCCGGAATTGGGGGACGGCAGGTCAACTTTTATGTCTCCGGAACCTTTTTCCTGGACGTAGAAAGCTTTGC # Questionable array : NO Score: 8.30 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //