Array 1 256686-261158 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCB01000001.1 Nitrosomonas sp. JL21 JL21_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 256686 28 100.0 32 ............................ TGTAAGTCACAGATTTTATAAGATTTTCCTTC 256746 28 100.0 32 ............................ AGAAACGTTGACGCGGTCGACGCCCTCAAAGT 256806 28 100.0 32 ............................ CCAGCCGTGTAACCCACACTCGCGCTAAAAAG 256866 28 100.0 32 ............................ AGTCTGAGTTTAGCGATGCGCGCGGAATTGCA 256926 28 100.0 32 ............................ ACTTAAAAAAGCCGGCTTGTTGCGAAATTAAC 256986 28 100.0 32 ............................ AATTGCCAGCGAAAACGATAACTAAAATTGTA 257046 28 100.0 32 ............................ TATAAAAACAATAATTTATGACTGTAAAGTGA 257106 28 100.0 32 ............................ AGCGGCACCTCAAGGTAAAATTTAATGTCGCC 257166 28 100.0 32 ............................ TCAGGCGCTGCATCGGCGCTGACACCCTCAGA 257226 28 100.0 32 ............................ TTTCGGCCCGGTCGACAACCAGCCGGGACAGC 257286 28 100.0 33 ............................ CTGAGGGTGTTGACTGCCCAAGTGGAAACCGTA 257347 28 100.0 32 ............................ GCCTCGTTATCGTCAAAGTCGTGTAACACGAT 257407 28 100.0 32 ............................ GTATGACTGTACAGCGGTCTCAGCAAACGATC 257467 28 100.0 32 ............................ TGGAGATGGCGCGGACGCCGCACCAGGAATAC 257527 28 100.0 32 ............................ GATAGCGTCAAACAGCAAATCATCAAGGATGA 257587 28 100.0 32 ............................ AAGCGACTTAGTGCCGGCCATTATATTTTCGC 257647 28 100.0 33 ............................ GCCAAGTGGCAGAGGCGCAGATCCTTGTTGAAT 257708 28 100.0 32 ............................ AATTACCGAAACGCTTATAGTATTCGCCAAGC 257768 28 100.0 32 ............................ TGCCCGAGCCGATACTGAACCAGATCAGGCGA 257828 28 100.0 32 ............................ AGCAATGCAAACACCGTACAAATCTTCATTTT 257888 28 100.0 32 ............................ AGTTCAATACAGAATGAAAGACAGGCCAAAGA 257948 28 100.0 32 ............................ AACATATTGGACATCCCATGTCATTCCTTGCT 258008 28 100.0 32 ............................ TTTGATATGAATCGAAAGGGTAGGTAGTTGCA 258068 28 100.0 32 ............................ TTTGCGTGTATTCATATCAAAAGAAATTGATA 258128 28 100.0 32 ............................ AAATCTTCATGATCCAACCATGGCAAATCTGA 258188 28 100.0 32 ............................ TGGAGCAGAGTATTCCTTCACACCTTTTGGAG 258248 28 100.0 32 ............................ TAAAAAAATTAGGAACATTTGTGAGCGTTAGA 258308 28 100.0 33 ............................ CAGCAAATGATCAGCAAGGGAAAGGTGCAGGCT 258369 28 100.0 32 ............................ CGTAACCGCCACAAAGACCATAGCATCAGGAA 258429 28 100.0 32 ............................ TTCGATCAGATCAGATTCTTTTACTCCAGACC 258489 28 100.0 32 ............................ TGGTATCGTGGAAATGCAAATCCTCGATCATA 258549 28 100.0 32 ............................ CAGGACAAATCGTGCTCTAGCAATGCATCTAT 258609 28 100.0 32 ............................ AGGTGAAGGGGCTACCGCACCGGCAGTCATAA 258669 28 100.0 32 ............................ ATATGCAAAACTTGATGAACCGATGGAACTGA 258729 28 100.0 32 ............................ TTTCCTTAGCCTCATTCTCGTGTAACTTTAAT 258789 28 100.0 32 ............................ AATGTAATCACTGGAACCGGATTCAAACTTGA 258849 28 100.0 32 ............................ AACTCAAAAAAGCAGGGTTGCTTAAATAATGT 258909 28 100.0 32 ............................ ACCAAGACCACATGCGGCGTGCGTTTTTCAGA 258969 28 100.0 32 ............................ TTATACGATCTAATCTCAACAATCCTGCCAGC 259029 28 100.0 32 ............................ ACTTCAAAGATGGAGGAAGTCATTTTGAATGG 259089 28 100.0 32 ............................ CAAAGAAATCAAAGAACTTGTCGAAGATTTAT 259149 28 100.0 32 ............................ CGTAATCGCACTTGAGTCTGTAACGCTCGATC 259209 28 100.0 32 ............................ AGCATACACGAGATTATGATAGGGTGGTATAC 259269 28 100.0 32 ............................ GACAGCATGATGCGTTTTCTGTGGCAATTTAA 259329 28 100.0 32 ............................ ATAAATACGAACCAAGAAGTTCCCGATTCGCC 259389 28 100.0 32 ............................ AGCAGAGAAAAGCTGTGCGCGAGTTGCCGATG 259449 28 100.0 32 ............................ AAAATTAGCGCACGTTTTTAATTTATACGATA 259509 28 100.0 32 ............................ AGGAGAAGCCGCCCCTATTTTGACGAGTTTTC 259569 28 100.0 32 ............................ ATAGTTCAGGCGTATATTTGCACCACTCCAAT 259629 28 100.0 32 ............................ GCTATGATTAATTTTTCCATCATTTTTTCAAC 259689 28 100.0 32 ............................ AGTTGCCGCTGCGCGGCGTTGGGCGGCCATTT 259749 28 100.0 32 ............................ TGTATTTTTAGGCGTTTCGGGGAAAGTAATCT 259809 28 100.0 32 ............................ GAAAGCCTGGATGATCGCGCAAACACTCAAAA 259869 28 100.0 32 ............................ TTTGGGTGCGCGCGTTTTTGTTCTATCAAATA 259929 28 100.0 32 ............................ ATAAAATTGTAACTCTTTATTTTTTCTAACAT 259989 28 100.0 32 ............................ TTTAAGATAATCGACCATACTCGATTGCAAAC 260049 28 100.0 32 ............................ TAAGGTCTGTTAGTCGTTCGCTGGCTGTTGCT 260109 28 100.0 32 ............................ ATAACGGTATACTTTCCCACATAATATATTCT 260169 28 100.0 32 ............................ ATATACGGTAATTACAAAAGATGGGAAAGAAC 260229 28 100.0 32 ............................ GCTGTCACGACAGCTTCCGCTTGTGAATCCAT 260289 28 100.0 32 ............................ GAAATCAACGGTAATGGTTGAATCGTTGCTGG 260349 28 100.0 32 ............................ TGGGGTTATCGATTCAACTGATGCGCCACCTG 260409 28 100.0 32 ............................ GATCAGCCCACGCCTTTGCCTCGGACTTGGTG 260469 28 100.0 32 ............................ TCCCGCCTGATATGAGAACACTTGGTACTTAT 260529 28 100.0 32 ............................ AAACAGTTAACCAGCCCGCTCAGCAGCAACGA 260589 28 100.0 32 ............................ ACTCCAAACGGATCTACATAATGCGCAGAAAA 260649 28 100.0 32 ............................ GATAAATAACCGATTTTTCTACAAATATCTGC 260709 28 100.0 32 ............................ CTTTTCCTGGAAGTTTATATGATGTATTCGAC 260769 28 100.0 32 ............................ TTCAGATCTGTATCGTCTTTTCGCTGCTGTAC 260829 28 100.0 32 ............................ GACTGCTGTTTCTATTTCTCCAAAATCCCACC 260889 28 100.0 32 ............................ ATCTGTGGCGCTGCACTGCTGCTGATATTGTT 260949 28 100.0 32 ............................ TATAACTGATTGGAGGCCCTTATAATGTCGCT 261009 28 100.0 32 ............................ AGATTAGTTCTGAAACTTCTACCAACTACACG 261069 28 100.0 32 ............................ GGAGACAGAACCATTTAACGAAAAAGGATAAC 261129 28 82.1 0 .................T..T.C...TT | GT [261145] ========== ====== ====== ====== ============================ ================================= ================== 75 28 99.8 32 GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Left flank : CCGGTATCCGCCCGGTGCCTGGCGCAGTCAAAGGTTATGCCGTTTATCAGCGCGAACAACCCAAAACCGGTCGGGAACGCTTAGCCCGGCGTTATGCGAAACGGCACAACCTGGATTACGAAACTGCGTTCAATGGTAAGGTTGAGTTGTGTGCAAAGCACGATAACGCAACCGAGCATCAAAAAATGTTGATGAGTTACAGTGAAATGCCGCACAAAACCATCACCACCCCGTTTATCCGGCTAAAAAGTTTAAGTAGCGGTAATACGTTCTGCTTGTGGATCAAAAAAAGGGAAATAGAAAACAGCGTTAGCGGAACTTTCACCACCTATGGTTTAAGTTCTGCTGCTTCCGTACCCGAATTTTGACCCATTTTTTTGGTGATCTTTAACAATTCAAATAAATCAGCCAGTTGCGATGTGGGTATTTGCAGGATGGTTATTGATTCAAAAATATCCTATATACTGCACCACGACTGGTTTTAAATATTCCTATCGTCA # Right flank : TGCCTGTTGCAAAAAACAGTATGGTGCCGAGAGATGCTTGATGTAGAAGAATTGGTTGGTGAAACTGATTAAAGACCAACCACCGAATTTTATCGGTGGTTGTTCGTCACTTTATCAAAGACCTTTATTATCAGAATACTCAGAGTATCCTGAGATCTTCGAGGTAAAGTCACGATCTTGGTGGGATCCTACTATATTTGCTTGATTACTTTTTTGCTCCATCGCCATTTTTCTATGGAGGTCGGCAAATGCCAAGCTTTCCTGTATCGTTTTTTCGTATGCTCGAATATTTGCTACAGCATGCGATTTGGCATCCAAGCCTTGTCTGCCAAAATAATAAGGACGTTCTTCATATTCCTGAAGTATTTTTTTGTTCGCTTGCAGCCTTAATTTTGCATCTTTGGCAACGCCCTCAAAATGTTTAACTAAAGCGTCATGATTTTCATTCGGAATCCCAGTGGGTTTAGCCACTGATGGACTCATTTGTGCACAAGCAGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //