Array 1 56392-57019 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000010.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56392 28 100.0 32 ............................ AAAAGTTAAAATCAAAACTGATGTTCCCCATT 56452 28 100.0 32 ............................ GATTATTGTCGCTAATAATGATTAACGAGCCA 56512 28 100.0 32 ............................ TCTTATGAGTTGGGCTATCACGCTTGGGGTAC 56572 28 100.0 32 ............................ CACCCGCCGCCTGCGCCAGCGCATCGCTGATA 56632 28 100.0 32 ............................ AGCCCTCGAAACCGAAACCGACCCTTTTTTGC 56692 28 100.0 32 ............................ ATGCTTCGCGCCATGTTAGCCATGACAGGCAT 56752 28 100.0 32 ............................ ATGTTGAAGGCCTTGATTGATTGCTTGGTGTT 56812 28 100.0 32 ............................ TTTTCCGGTTTTTGAAAATACAAAAACTTAAT 56872 28 100.0 32 ............................ AATAGTCGAAGAGCGCGATCAGCTTTCGCAGT 56932 28 100.0 32 ............................ TTTACATTATAAGAACTTCTGTTTGTTGTAAT 56992 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTAACCGCCGCACAGGCGGCTTAGAAA # Left flank : CGCGGCGCTGCTCTACGAAGAATCCCCGGAAAGCCACGCCCAACGCCAACTGCAAATCATCCAACAGCGCGAACAACGGGAATTTTTAGCCATCAACGGCATAGACCACAAGCCCAATAAAAAAGAACGCCGCTTGATCCATCGGTTTAAAGATGGGCAATAACGCCCATCACCTTACCGCGTTTCCGGTACAGAAAAGCTCCCCTCGCGATCAATATGAGCGGCATCAAACGGAGCGCAAAGGTCTTTAGCCTTTGGACGATAACCTAAAGCCAACGCATTAACATTCCGCTTACCCCCTGTAGCTTACCCATAACCATAACAGACCAGCCCCTATTTTTACCCCCTAAGCCTGCACCCCCAAAATTTAGGAATAAATTTAAAGCCCAAATTTACTTAATAATAATCAATAACTTATAGTAGCATCAAAAAACATTGGTTTTTCTTGCCAAAATCCCCGTAAAGCCTATATACTCTAGCCTCTGAAGCATCTAACTCCA # Right flank : AATCAATCTTAGCACCCGACTGGATTTGTTTCAGAAACGTTTGTAGGCAAGCATTTTTATGCTGAAATAGTCACGCTGTACCAAAAATTACACGAGGCTGACTTATGATCCATAGATACCAAGACAATTGCCGTTTTTGCGCCCATTATCTGGGCGGACAGCGCTGTAAGGCATTCCCTTTGTCGATACCTGCTTACTTATGGTCGGGCGACAACCAGCACCGTAGCCCCTATGATGGCGACCAAGGCATCCAGTATGCGTCTAAGCAGATGGCCGTGCCCGATGCAGATGCCTTTCTGTCCGGCAATTATTAATGGCTGGCGCATCCGTCACTGTTAACCGTCGGCCAGCATTTACAGCAGCTTAAAAACCCAAATGCCATTATCTACCCCTCACAAACAAGTTGGCGGCTTGGGCAACCCCGCCAGCTTGCAAGTATACTTCAACGGCCCAGCGGGGAATAAGCGCTGCAAATAACGGCTATTGCCCTTCTCTTCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2650-3044 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000041.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2650 29 100.0 32 ............................. GGCGGCAGTCTTTTCAGATACCGTTAATGTAA 2711 29 100.0 32 ............................. AGTCTATGCGCCAGCAAGAAAAATTCCGCAAA 2772 29 100.0 32 ............................. ACAGGCCGCGTTATGACCGGGCGCGGTATTGA 2833 29 100.0 32 ............................. ACAGGAATATTTCTTAATTAACGCATCATATT 2894 29 100.0 32 ............................. GAACTGGCAAAACTGACAAGCAACGTTTTTGA 2955 29 100.0 32 ............................. TGAATTGAAATTGTCCGAGCCGACCACCTGCC 3016 29 89.7 0 .......................G.T..A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 CCGTTCCCCACGCCCGTGGGGATAAACCG # Left flank : ATCCTCAAGAAAATCATTCCCACCATTGAAGACGTGCTGGCGGCTGGGGAGTTGACGATCCCCACTCCGTTTGAAGAATCTATAGCTCCCGCCATACCCAACCCGGAGAACATCGGCGATGTTGGTCATCGTAGTTGAAAACGCCCCACTACGTTTACGCGGTAGGTTAGCGGTTTGGCTGATCGAGATCCGCGCAGGAGTTTATGTGGGTGACTTGTCGAAAAAAGTGCGCGAAATGATCTGGTCGCAAGTTGAAGATGGGCTTGAAGACGGCAACGCAGTGATGGCTTGGTCTACCAACACCGAATCGGGCTTTGATTTTGTGACATTAGGCAAAAACCGTCGCTTGCCAGTGGAACTGGACGGATTGAAATTGGTGTCGTTTTATCCTATTGAGGGTGCAGATGATGCGGCTCTTTAACAACATGGAAAAAGTCAGAAAAATTGGTGGAAATTTAACAGCATTATTTCTTCTTATCTAACAATAAGTTAAGATAAGT # Right flank : ACGGAATAAATCTGTCGTTTGTTTAAATTGCACCCTACCTCCGTACTGACAGTTCCCTAGTTGCGCCCTAGTTGCGCCCTAGTTGTGCCCTAATTGCGCCCTAGTTGCGCCCTAGTTGTGCCCTAATTGCGCCCTAGTTGCGCCCTAATTGCGCCCTAATTGCGCCCTAATAGCGCCCTAATAGCGCCCTAATAGCGCCCTAGTTGCGCCCTAATTGCGCCCTAGTTGCGCCCTAGTTGCGCCCTAATTGCGCCCTAGTTGCGCCCTAATTGCGCCCTAATAGCGCCCTAATAGCGCCCTAGTTGCGCCCTAATAGCGCCCTAGTTGCGCCCTAGTTGCGCCTCAGTTGCGCACGGCTTATTCTTACGGGGGTTGGCGGGAATGGTAAGCGCGAAAAGTGGCGTTTTTTTAGTGGAGTTCGGTGGATGCAAGGCGGCGGAATCCGCCGTTTAATCATCCGGTTGACAGCGGTGTATGGCTTGGCGGACAATCTTATCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCCCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 426104-425656 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000003.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 426103 28 100.0 32 ............................ TTCCAGCGTTAAGATAGCGATATGCACACCAC 426043 28 100.0 32 ............................ GCGAATCAGTGCAGTAATTTTTGGCGCGTCCA 425983 28 100.0 32 ............................ ATTTGATGGATCAACAGGTACGCAATATTTCC 425923 28 100.0 32 ............................ TCAAAAAGATAAACCAACAAGATAGAGGGCAA 425863 28 100.0 32 ............................ AATAACATCGGGCGGTATCCTGAGGCCGCGCG 425803 28 100.0 32 ............................ AAGTTCGCGCGGTTCAAATGTCGCACCTGTCG 425743 28 100.0 32 ............................ ATAAAGATTCACTATCCAACCAACCATAAACC 425683 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGGGACGGCCACAGCGCAGCCCCATCCGTGCTAGCGCTGTAAAATTCGGCGTGCATATTTCTTAACATGGGCGCGAAGCAGCCGCCATTGCGGCCAGCCAACAATAGAGGCCGTCACGCACCGGACGACCCAAAGCGGAGTGCAATGGCCTTTAGCCATTGCACGATGACCTAACCGAGTGTGCCAACAGATCGCCTGCCGATTGCTTAACACCGGACGCTATAACACGAAAATACCCACCCCTCCCCCAAGCCGCTCTCCTAGCCTTACAAACTCAGAACCCCAGCCCATATCCAAACGCGAACAGACAGCCTTGCAAAAGTTGGGCGGATAAGTAGCAGGGCATAATACCGACGCTGGTTTTTTACCCCTTATTTTTAGGACAAATAAAAAGACATTGAAAAACAATTGGTTGCGGATTTGTGTTTTTTTATTGGTAAAAAATGAAAATATCGTTTAAGCTGTTGTTGCGTTTGATGATTTTTTGTTTTTATTTCA # Right flank : TTATAGGGGTCAAAACGGTTGAATGTCAGCAAACCGCACAATCCGCCCAAGCCATTTCCGTCGGGCATAAAAAAACCGCAATCAAGCGGTTGATTTGTATCGAAAGTTTGGAGGCTGCGGCCGGAATCGAACCGGCGTAGATGGCTTTGCAGGCCACTGCATAACCATTTTGCTACGCAGCCGTATCTCGAAATAAAAAAGCCGCGAGGTTCGCGGCTTTTTCTTGAATCTATTGGAGCGGGAAACGAGATTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCACTGAGCTATTCCCGCACTGCAATTTATTTTGCATATTATAAGGATTTTTTAACGTCCGTCAATACTTTTTTTAAAAAATCGTTTATGTCAGCGTTTTTTTTATTGGACATCAATCGATAAAGCCCAACCTTCGTTGCCTTTGCATTCACCTTCTTCCATGCGCACTTTCGCGTAGGAGCCTTTTTTACCATAAGCATCTTGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 76071-74363 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000013.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76070 28 100.0 32 ............................ GGGATGCAGTTTGTGGTGAATGGGCTGGGTAT 76010 28 100.0 32 ............................ ATAAAATGTGTCATTGGGTCAGGCGGCGGGGC 75950 28 100.0 32 ............................ TGCTGGTCAAGCGGATTGTTAGGCTTGAGTCT 75890 28 100.0 32 ............................ TGATAAACTCGATCTCCACGCATTGGGCGTGG 75830 28 100.0 32 ............................ GCAATGCGTTGGCTATGTGGGGCGATAGGACA 75770 28 100.0 32 ............................ TAGAGTTTTTATAAAAAAGCGTCTTAGCTTGA 75710 28 100.0 32 ............................ GTGCTAGCGGCCTTAACCCCCGCTTTAGCCGC 75650 28 100.0 32 ............................ CCCGAAGTCCTGCAGGGCTACCTTAAAGCTAT 75590 28 100.0 32 ............................ AAAAGAAAACTGCCCAAAAGTACGAACTTCTG 75530 28 100.0 32 ............................ AGTAATTTGCGCCGTTATGGTTTCGCCCAAGG 75470 28 100.0 32 ............................ TTGCGCCAATATCAAGCAGGCACTCATTTGAC 75410 28 100.0 32 ............................ TGAGTTGTATCTCGACTCTTTTGCCTGATGTT 75350 28 100.0 32 ............................ TTTTTCTGGCTTGCAGTAGGCAAGTAATCGGG 75290 28 100.0 32 ............................ TGTCTTACGCATCCTTTCTTCGAGATCGTCAA 75230 28 100.0 32 ............................ TAACATCTCCCGTGTACCGCATCATGGCAAGC 75170 28 100.0 32 ............................ GTTCTGGCCGACACTTTGAAAATCCGTTGGCA 75110 28 100.0 32 ............................ CTTTATTGCTTTGGATTGAATCACTCAGCGTT 75050 28 100.0 32 ............................ GCGAAGCGCACTTGCCATGTAGCGCGTCAGCG 74990 28 100.0 32 ............................ AAAGGATACGGGCGGAGGACGGAAAATCGAGA 74930 28 100.0 32 ............................ ACCAACATCAGCCAGACGTTAAGTAAGGACTG 74870 28 100.0 32 ............................ ATTTAAAAAATGGCATGAGGATGGTTGGCTAA 74810 28 100.0 32 ............................ AAATGCACACGCATCACATTAACAAACTGCGC 74750 28 100.0 32 ............................ TGGCCGCTTGCGCTGGGTGATCTGCTTAAGCT 74690 28 96.4 32 .....T...................... AGATAGGTGCATCGACTTTGGCTTACCGTCAA 74630 28 100.0 32 ............................ ATTGCGTCAGAAATCGCTTTTTGTTGATGAAA 74570 28 100.0 32 ............................ GGGCGCGGGTAAGACGCTCTCTTTGATAGATG 74510 28 100.0 32 ............................ AGACCGGGATTTCACCCCGCGCGTTAACGCCT 74450 28 100.0 32 ............................ TTCTTGGATAATGGGTGGTGTTTTGTTGGCTT 74390 28 92.9 0 A.......................A... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.6 32 GTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCACAAGCATTCGCCCTGTGCCGGAAAAACTCAGCGGGTTCGCCACTTATCAACGCGAACATCCCAAAACCAACAAAGAGCGTTTAGCCAGGCGTTATGCTAAAAGGCATAATATGGCCTTCGAAACGGCGTTGCATAGCACTATTGATTTAACCGCCAAGGCTCCCCCTGACGCGGATTACAAAACGCAATTCCGTTATTGCGATATGCCGCAAAAAACCGTCGCTACCCCGTTTATCCGCTTGACAAGCCTGAGCGGCGGGCAGACGTTTTGCCTGTGGATTAAAAAAACGGTAGTTGCAGAGCCGTCGGGGGCGGCATTCAGCAGTTATGGCCTAAGTGCCGTTTCCACTGTACCCGAATTTTGACCCATCTTTTTTGCGCTCTTTAAAAATATAGTAAAATCAGTTGGTTGTGTGGCGGTGTTTTTTGGATGGTGAATAACGGTAAAATCTCCTGTATACTGCTACACAACTGGCTTTCAGAGGTTTTGAGGTCA # Right flank : ATAAAATGAATATCCCACGGCGGCGAATATGACGAACTTTTTCATGGTCACGTCGTGGGGTTTGGGGGCTTTGCCAAACTAGCCCTATAAATTCTCCAGCGTTTGCGGATCTAATCCTGTCAGTTCGATAATTTCGTCTAACGTGTAGCCTTTGGCTTTCATCTTAGTCGCCAGCGTCACTTTTTCTGCTATTTTCCCTTGTGTTAATCCCTTAGCCAAGCCCTGAGCTAGGCCTTCTGCCAATCCCACAGCCAAGCCCTGCGATTTACCGTCTTCCCGCGCGGTAGCAAACGAATTATTCAAATCCCGGTAATACTTTAGGCTGTCTTCATATTGTATGAGCTGTTCATGGTTAAATTTGGCAATTTCGGCGACTTCAAATAGGCGTTTGAATATTTTCTCCGTCAGTTTGGCGGGGATTTTTTCCAGTTCGGGTAAATGCTTAAGCACATACAGCCATTTTTCAAAACGGCTGTCTATTTCAGCCAATGCTTTGTTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32869-33341 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000009.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 32869 36 100.0 37 .................................... ACAGTTACATTGCAAAGTGTAATATCTGAGCCTGTCG 32942 36 100.0 38 .................................... TTAAAGGTAATTTTGCCGCCATTTCTAGGTAAATTGGT 33016 36 100.0 35 .................................... ACGAGTTGCCTTAAGTCTGCGAAAGATTTTGCTTT 33087 36 97.2 37 ...........A........................ TATATTTAAAACATGCCGATGTTCTTAATGTGTTTGT 33160 36 100.0 36 .................................... AAAATTGCCGCTGAAACTTCCGTGTTGTCGATTTGT 33232 36 100.0 38 .................................... TTTAAACGCTTGAGCGTTCAACGGTCCATTATAATCAA 33306 36 83.3 0 ..............................ACTCCT | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 97.2 37 GTACGACTGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : ACACCGTGATAGAAGCCGCCCATACCCTACACCGTGCGTTGGGCTGGTATGCCCAAGGAGCCGACTTTGCCGACGCGCTCCATCTTGCCAGTTGTGGCGATGCCGTTATGCAGACGTTTGATAAGGCGTTTTGCAAAGCCGCGCGGGAAGCGGGCGACGCCCCTCAAGTGCGAGTTTGGGAGTTATAAGCCGCGTCAATGAGTCAAACAAGCCCGCCCCGGACAGGCCACTATTGACTTGCCACCTGTACGCCAAGGCCAGAACTGCTTTGCAACTTAGTTTTGACGTTATCGGCGCGGTTTTGGAAAAGGGAGCGGTTTTTGGGGTTTTTAATGGAATCAAGCACTTGCGATAAATAGTGAAAAAACCGCGCCGTATGTTGATTTATAAGGGAAAACAGGGTGTTTTTAGGTTTATTTTCAAGGTTACTGACAAATAAGGCAGTCCGCGCCGAAAATAGCCATAATGGGCCTTGCCAAACAAGGGGTTATAGGCGTACA # Right flank : TCCGTCCCCTGAGCGAAGCCGAAGGGGACAATCAAAAATGCTTGCCCTACCCAAACACGCTTCCCCCCCTACCCCAAAAACCCCCCTTAAGGCAGTAACTCCGCCCAAATAGTGAATACTTCACTATTTTCTAGGTAATACTTAATATCTTTCCCTGTTTTTTGCTGTTACGATACCCATCGCTTGCCGTTTGCCCTGTCAAACGGTCGCCGTTGCCAGATGCTGGTATTAAAAACCTGCCGTATCCCTATTTGCCAATTAACCGAACGGTGTAGGCTGAACCCCAACACCTTATCCTTAGAAAGGTGTACTTTGCCCAGACCGAACACCCCTGACAGCCCCCTGCCCTATAGCCAAGGCGGCAATTTGCAAGACTTCCGCTTGGCGTGTTTCCAATTCCAATTGCGCCTGCACGGCAGCCTGGAACTGCCGCCTTATAAAGGCGCGAGCTTCCACGGCGCGTTAGGTTTGGCTTTGGCGAAAATCGGCACCCGCTTCCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGACTGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 42377-42769 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000009.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 42377 36 100.0 36 .................................... ACCCACAGAACAAGCTGCAAAACAATTTTCAGATCT 42449 36 100.0 33 .................................... ATAAATTGAATCAAGGTCATCAAGCCCTTCACT 42518 36 100.0 36 .................................... ATAGATGTTGGCGGCAGTGCCTACGGTGGTCAACCA 42590 36 100.0 36 .................................... CCAATATTTTCGTTAATCACCGAAACCAACGAACTG 42662 36 100.0 35 .................................... CAACGGGTCAACAAACTCTGCAATGATGTTCTTTT 42733 36 94.4 0 ..............................A....A | C [42766] ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 99.1 35 GTACGACTGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : GGAGAGAACTTCATGCTTGAACTACTAGAAATCGACTTATCCACATTCTACGACGGGACCGCCAAGCTGGCCTTATTGTCCGATTACGAACAGCAAGCGAAAAGCTTGGCGGGTGAGGGGCAGGATGTGGTGCTGACGGGGGCGGCGCCGGTTTGGCTGTATTTGCGCATTGCCCATGCCCTGCATGGCAAAGCCAAAAGCCTGCATTACCGCTCTCCGGTGACTGGCGATGTGCTGGTGTTTGACCATAACCCGCATTAAGCAAGATTTGCCGCTTAGTTTTGACGTTATCGGCGCGGTTTGGGAAAAGGGGGCGGTTTTTGGGGTTTTTAATGGAATCAAGCGCTTGCGGTAAATAATGAAAAAACCGCGCCGTATGTTGATTTATAAGGGAAAATAGGGTGTTTTTAGGTTTATTTTCAAGGTTACCGATAAATAAGGCAGGCCGCGCCGAAAATAGCCATAATGGGCCTTGCCAAACAAGGGGTTATAGGGGTACA # Right flank : ACAACAACGCCCAAGGCGGTAGGTTTAGGCCGCAACTGAGGCTATTCGGATGTTGCCGACCGGATCGGGGCGGCCTACACTTTGCCCTGTACTTCGGAGTCGCCCTATGCAAGCCGTCACCTTAGCCGATGCCCTCACCGATTTCGTTTTACGTCAGGCTTGGGCTAAGGTGTACGAAAACCAAGGCTGTGCGGGGGTGGATGGGCAAAGTTTGGCGGATTTTTCACAAGCCTTACCCGCCCAGCTAGATACCCTGCGCGATGAAGTGCTGTACGGCACTTACCGCCCGCGCCCGCTGTTGCGGGTGGCGATAGACAAGCCCGCGGGCGGCAAACGCCCGCTATCCATCCCCGCCGTGCGTGACCGGGTATTGCAAACCGCTGTCGCGTTAGTCACCGAACCGCTGTTTGAAGCCGAGTTTGAGGATTGCAGCTTTGCCTACCGCAAAGGCCGCAGCGTCGAACAAGCCGTGGCGCGTATCCAATTACGCCAACGCCAAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGACTGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 46773-47249 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000009.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 46773 36 100.0 36 .................................... AATCGATTTGTTCTTCGCCAACACGCATGGCCAGAA 46845 36 100.0 36 .................................... AAATATATATCATCGTCTGATAAAAGATCACTTATT 46917 36 100.0 41 .................................... TCAATACTGTTTTGTAATTCAGAACAATCAGTTATCATTTG 46994 36 100.0 38 .................................... AATGAGGCAGAAAGTTCAATTTCATGTAATTCGCCGGT 47068 36 97.2 39 ....A............................... TCAGCAAATGCATCAAACACGTCCGCTTGGGTGTCGATT 47143 36 97.2 35 ....A............................... TCATTTTGTCGCCGACAAAGACCAGCAATTCTGTC 47214 36 94.4 0 ....A..............................T | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 98.4 38 GTACGACTGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : GACGTGCATCACCCCAAAAGGCTGCGGAAAATCGCCAATGAAATGGAAAATTTCGGCAACCGCGTCCAACGCAGTGTGTTTGAATGCCATTTGGAAACGGCGCAGTTGGCGGATTTGCAACAGCGTTTGGAAACGTTGATGGAGCCCGTGGCCGACCAAGTCCGCTACTATCCGTTATGCGGCAAAGATAAGCAGCGGATTATTGTCGATGGCCTAGGCCAAGTGAGCGCCGACCCGGATTTTCACTTAGTCTGAGGGCGGGGCTTTAATGCCACTGATTAGCGGCGTTATCGGCGCGGTTTTGGAAAATGGGGCGGTTTTTTGGGTTTACAATCAAATCAAGCACTTGCGGTAAATAGAGAAAAAACCGCGCCGTATGTTGATTTATAAGGGAAAATAGGGTGTTTTTAGGTTTATTTTCAAGGTTACTGATAAATAAGGCAGTCCGCGCCGAAAATGGCCTTAATGGGCCTTGCCAAACAAGGGGTTATAGGAGTACA # Right flank : TAAGCGGATGTTGCTATGGCTAGCCAAGTGCGCGGCTTAGCAAACAAACATCGCCAACCTTATTGGCGTAATATTGGCTTGCTTTGTCGCCGCTTGCCTTTGTCATTCAAATAACCCGCACATTGGGTAACTTGCCTTGTAGGGATAGCTACTACCATCATTTCTAAAAAACTAATGATTGCCGTTAGTTTTTTAAGTCAGTCTGCTCCCCTGCTTAACCGCCCGGCCTATAGCTATCTGCGATAATTAAAGACAGGTTTTGGTTAGCGGCAGGTCTATACGCTTTTTCGCATAGCACTTTGGCTTGTTTTTGGGCTTGGCTGGAGTATCACGGCACTTCAAAATGACAGCAGGGCAAGCGCATGTAAATTAAACGCTTTTATAATCAATAAGATATGGGAATAAAAAAGCCTCAATAAATGCCAATTCTTATACAAAACATTGAGTATACGATAATTTAAAAAATCAAATGCGTTTACCCTGAAAATGACGGCGCAAAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGACTGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : GTACAACTGCCCGGACTTTGATAACGGGATGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 136793-135116 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFZ01000009.1 Methylovulum psychrotolerans strain Sph1 AADEFJLK_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 136792 28 100.0 33 ............................ TACCGCGCTCTATGGCAGTTAGGGCAAACTCAA 136731 28 100.0 33 ............................ CGGGTAAGTCGTAAAAAATCCGCCCAGGTTGGG 136670 28 100.0 34 ............................ TGGCGCGACGATCCACACAAGCAATTGTTGAACA 136608 28 100.0 33 ............................ CCGAAAGAGCTACTGGGCAAGGGGTGGCGGCAT 136547 28 100.0 33 ............................ CACCCGTCGAGCTGCTGTAAGTCGCCGCCCCTG 136486 28 100.0 33 ............................ TGCGGGAACCGTAACCCGCGCTTTATCGGCTAG 136425 28 100.0 33 ............................ TCAATAACAACCCATTGATTTGTATTGCTATTT 136364 28 100.0 33 ............................ TTCTTGCAAATCTGTGGCCGGATACCCGGTATT 136303 28 100.0 33 ............................ CGGTACGTTAATCAGCTATCCTTCGGCTCCGGC 136242 28 100.0 33 ............................ CCAAGCCCCTTTTTATGATTCGTATAACCTTAC 136181 28 100.0 33 ............................ TTGTTGGCGTTGCGCTGGATGTCGTTGAGCCAA 136120 28 100.0 33 ............................ CAAGAAGGCGCAAAAGAATACCACGCTGGCGGA 136059 28 100.0 32 ............................ GTTAAAAACGCCTGTTGTGTTGTTATATGTCG 135999 28 100.0 33 ............................ TGGTATTACGATGGGTATTCCGTCCAGCGGGCT 135938 28 100.0 33 ............................ CACGTCGGCGCGTAATTGCTTGTGGGCAATATT 135877 28 100.0 33 ............................ TATCAGAGCTATTTCTATATTCAACATTATTTT 135816 28 100.0 33 ............................ CACCACTGCACAAGCCACATCGACCGTATTGGG 135755 28 100.0 33 ............................ TATAGCGATTTATGGCGGTCTTACAGCGGGATT 135694 28 100.0 34 ............................ CAAGGGCTATTATTACGAGTGCTTCAATCGTTTG 135632 28 100.0 33 ............................ CGTAACCGCTGACTTGTCAGGCGCGGCATTATC 135571 28 100.0 33 ............................ TGCCGTTGCACAGGCGATTGCTCACGGGGAAAT 135510 28 100.0 33 ............................ TCGTTGACTGATTTGTGTCATTAGCCATTTGCC 135449 28 100.0 34 ............................ TCACATCGGCCTCGACCTAAACCTAAGCAACGAG 135387 28 100.0 33 ............................ CATGTACCACTCTCGTGTTATAGCGCCATTGCT 135326 28 100.0 33 ............................ CAGCTTAAGAGATTCGATTCACGGCATCCGCGT 135265 28 100.0 33 ............................ CGTTGTTGGTGCTGAGGGAGTGCGACGTTTTGG 135204 28 100.0 33 ............................ TGACGGCGGCAATTATTCGACCGTATTTATTGG 135143 28 82.1 0 .....................T.TGC.G | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.4 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GTGGCAAAAGACATTGAAGACAGTTTGGGGGTAAAACAACATGCTAATCGTAATAGCGAATGACCTGCCGCCTGCGGTGAGGGGCAGGATGAAGCTGTGGTTTGTCGAGCCACGCCCGAACGTCTTTGTGTCGGGACTAAAAGACTCCGTAGCCAAAAAAGTAATCGACTACCTTTACCGGCATTGCCCGCCCAACAGCGGCGTAATGATTTTTCGCCGGATCAATCAACCGCCGGGTTACGAGATTCAAGGTATCGGCGACACGCGGCGAAGTATGATTGACATTTCAGGTTTGCAACTGGTGTTGGAAAAAGATGACTTTTACTCCGCCAACCAGACTGAAGCCCCTTTGCCAGAAACAAACAATGCCGTACAAACGCCGTCAGAAGCATCCGTCACCACCCATAAAAAGCCGCCATTTTGAGCCGTAACATGAAAACCGCAACTGGATTTTATACTATATATTGTTGTTAAAAGAAATTTCACCACAAAATGTTGGT # Right flank : GGCGCACCGCGTGGGCGAATGGCAACATGCCCAAGTCAAGGCCATCAAAATAAAAAAACACCAACGCCCTGCCAAAAATATTTTCAGGCTCGGCTTGGACATTATCAACGAAGCCCTATTTCAGATGGCGTATGGCTTTAGGAATACGGTCAGCGCCTTATTTGCCTTCCTCTGCGTGGACAATAAGGTGACTTAAGTTTTAACTAATTTTTGTCATATACAGAGTTTTTTAGCTAGCCCATAATACGGCACAATCAGTTTTAAACCTTTATTATTATGTTAGGATACCAAAAAATCGGCATGGGTTAAATTCAATCCGGCGCCCAAGGTGGCAATCTGTACCGCTGCACTAGAGCCATTACCATCGGCATCATAAAACAATGCGCCTGTTGTGCTGTTGTAGATGACATAATCATTGCCGTCAACAGCGGACGTGGATTTTACAAAATTTGCTTTATCCAATAGGTGGTCTGTGGTGATTTTTAATTTCGTAAAAATGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //