Array 1 334977-336102 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPR01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_1510 NODE_1_length_765755_cov_2.22574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334977 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 335038 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 335099 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 335160 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 335221 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 335282 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 335343 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 335404 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335465 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335526 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 335587 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335648 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335709 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335770 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 335831 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 335892 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 335953 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 336014 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 336075 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352361-353957 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPR01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_1510 NODE_1_length_765755_cov_2.22574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 352361 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 352422 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 352483 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 352544 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 352605 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 352666 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 352727 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 352788 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 352849 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 352910 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 352971 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 353032 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 353093 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 353154 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 353215 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 353276 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 353337 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 353398 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 353459 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [353501] 353501 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 353562 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 353623 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 353684 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 353745 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 353806 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 353867 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 353928 29 96.6 0 A............................ | A [353954] ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //