Array 1 45798-45231 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000037.1 Alkalihalobacillus clausii strain 7538 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 45797 32 100.0 35 ................................ ATAATTGATCTTTGTTTTGTAACTTCCGACTTTAT 45730 32 100.0 34 ................................ TCATTTCCCCAGCAATGGTTAACTCGTCACCCTT 45664 32 100.0 36 ................................ GAGGATGGCGCGGGCGTAACGCGTATAGACGTAGGT 45596 32 100.0 34 ................................ AAATCCATATGCTTTTAGTTTTTGAATTGCTGAT 45530 32 100.0 35 ................................ AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 45463 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 45396 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 45329 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 45262 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.9 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATGCCCCCTTCCCATCTATATAATCAATGTTTAGGATGCCCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGATAGAACCCTTAGTATTACAGAATACAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGAGTTTCTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : AAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGTATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCCATAATGCAGCCTTCGCAAAAGACTTAAAAGAACAAAAAAATTATACTGCCGGAATCACAGAGGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGTACAAGATATCAAGGAATTAAAAGAAGATCAGCTCATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60384-59487 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000037.1 Alkalihalobacillus clausii strain 7538 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 60383 32 100.0 33 ................................ AACAAAGATAACCCTGTCCCGCTGCTAATCATG 60318 32 100.0 36 ................................ AATAACAAACGACTTGGCGGCTTTTTTGACTGAGGC 60250 32 100.0 34 ................................ GATGCTGATGAAGTCGCGCCTAGCCACCGTACAC 60184 32 100.0 33 ................................ GTTTCCGCAGCTACATATATAGTCAAGATAGTC 60119 32 100.0 34 ................................ CCCGAAGGTAAATAAAATTTACTATCCTAAAACA 60053 32 100.0 34 ................................ ATAACCGCGGTCCAAGTAGTCGTTATGTGCTTGG 59987 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 59920 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 59852 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 59787 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 59720 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 59654 31 78.1 105 ..........A..C......T.C-......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 59518 31 78.1 0 ............T........AC...-..TCA | A [59506] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 13 32 96.2 40 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : CTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATATG # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4118-3752 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4117 32 100.0 36 ................................ CCTGACTTAGCCGCCAGTGCAAGGAACTTAGTGGCA 4049 32 100.0 36 ................................ GAATGTTCACTCTCATTAAACTCGCTAGCAGCAAGT 3981 32 100.0 34 ................................ CCCCCAGCTGGTTAGAACCGGCAAGGCAACTGTA 3915 32 100.0 34 ................................ CCTGACTTTTTAATCATGCCATATCCGGTAAAAA 3849 32 100.0 35 ................................ TCAACGTAGTCATGGAACTCTGCAAACGTCGTTGC 3782 31 78.1 0 .........C.T.......T...A...-..CC | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GGAGTCTCGTTCACTTAGGAAAAGTGAGTTCATGGCTTTTATTAGTGATTGTTAGTTTCCTGATTGTAGCGACATTAAAACAAGTGAAAGGGAAGAGATCCACTGGTGTAGATGCTAGTCAATCTTTTATAAAAAAGCAGTGAGTGCTTTTTTATAATGAAGAAACAACCATTCTTACTGTTAGTATTAATGGAAAGAAACATAAAATGAATGAAGGACAATAGATCGAAAGGGGCGATATAAGAATAGAAGGGAACAACATCCACAGTTTGATCTTCTTAATCTTCCAAGAAAAAGAGGAGCAAAGAAGCAGCATTTTTAGTGCGAACCCCAAGCGCACATAAAATTACTAGACCACCCGCACCAAAAAAGAGCCTAACTATGGAAAAATATGTGCGGAAATGGTTAAATGTTGTATATGTCCCATGGTATGATAGAAAAAAGAGCAACTTTTTCCTATTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCGCT # Right flank : AGCGCAATCAAAGGCGGCAACAAACTAGCGGTTTTCCGCATTGCCGCCTACGACAAGGAAAAGAAGAAACGGGTTTCTTCAAAGCAAAAAAAGCTTATTTATCAAAAATAAAGACAAACTCGAAGAATTATATGCCAGTCTCCAAAAAGGACAGCTAATCTCTGTCGAGCACAAAGAAAACAACGGATATACAAACATTTATGGTCTGATGGATCGCTCTTACGCAGACAGACGCAAGTCAGCGCAGAGAGGACAGGAAGCGGAAGCAAAAAGAGTGACTGGTCGTGCCAGTCACTCTTTTTTTGACCTATACTTCGAATAAATATTATAGACAAGCGCTCACAAATTCGCTATTTATCACAGTTTAATCCTTTGTGAACCGATCTTGTTCTTCAAACTCAAAAATGATTGATTTTACATTGTGTAGATTCTCTTCTGCAAATGTATCTTGATCATTCTTATCCTCTATATACACCATTGCATTGGTCTCTATTTGATAG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9040-7949 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9039 32 100.0 33 ................................ TAGTTCCTTTGCCTCTTTTTATGTTATAGTATA 8974 32 100.0 36 ................................ AATAACTGCATCCTTGCCGTCTGTACCGTCAGTACC 8906 32 100.0 36 ................................ TAGCAATTTTTTGCTTGTGCCATATCCTTTTATAGC 8838 32 100.0 33 ................................ TTAATCTTCTGCATAAGTTCTTTAGTCGTCCTC 8773 32 100.0 33 ................................ TTCAAGGGACACAGAGGCAGAATTTTCTTTGCC 8708 32 100.0 34 ................................ AAATCAGCGGTAGACACAGAAAGTAATTGCTGGT 8642 32 100.0 35 ................................ GCTAGAAGAGTGGTTCAAAAATCGAAAAGGAGCGT 8575 32 100.0 35 ................................ TTTGCCTTCGACTGTTTTTCTGATTTTGGTGTCAT 8508 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACCCTA 8441 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 8374 32 100.0 33 ................................ GTAAGTCTTGCCCGTCTCACGCGCCAGCTCCAT 8309 32 100.0 34 ................................ GGCATGCCTACGTCTCCTTGTACAGTATCAAGCA 8243 32 100.0 33 ................................ GAGGAAATCAATAACGCTCCACAAACGTTTTCT 8178 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 8112 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 8046 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 7980 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 98.3 34 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 16827-16325 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 16826 32 100.0 36 ................................ CGCAATCTGTCTCTGAGTCATACTGTGATAATTGTC 16758 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 16690 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 16622 32 100.0 34 ................................ TTCTCCAGCGCTTTTTGGAGCTTGCGGTCAGATT 16556 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 16490 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 16423 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 16356 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAGAGGAAGGGGAGGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGATAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : ACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 23500-23268 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 23499 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 23433 32 100.0 35 ................................ CATATAGTCCTGCCAGAAAATTTTCAGGATGTCCG 23366 32 96.9 35 ..........T..................... CCGTTTTTAACATAATCCATCATGATGCGCTGAAA 23299 32 75.0 0 ...........T.............AAATGTG | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.0 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : AATAAAACGTGCTACGGGGGATGTTCAAAATCGCACACATGGCAGCCACTGGGTAGATCCCGCGATTTTGACGGATCACGTCTATTTTCGTCCCATGATCAGCGCCGCTTGCTTTAAAATATCATTTTCCATAGCGAGCTTCTGGTTTTCTTTTCGTAGGCGGATCAGCTCTTCTTGTTCAGGCGTACGATTTTCTTTCTCGGTGAATGCGCCACTTGTTTGGTATTGACGAACCCATTTATCAAAAGCAGATGGCGTCAGTTCATATTCACGGATGATTTCCGCTCTCGGCTTTCCGGACGCATACAGTTGCACAAGCTGTTTCTTAAATTCGGCTGTGAACCTTCTTCGTGGACATTTGGCTTCAGTCATGATATCCCGATCCCTTCATTGGATGATTCCATCTAGTCTAGTAGACCTTAGAGCATTTGTCCAACTAAGTGTAACCTATCCATGGATTGAAATAATGGAAGCAGTAGTGTTTCCGCCTTTTCTAGGTC # Right flank : GGCTTAAGATCCTTGCACGGTGTGGCTGTGTTTCCCCCATCTTATAAATGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCGATGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATAGCTTGCCAGAGCTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACACCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGTGT # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 26637-24809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 26636 32 100.0 34 ................................ GCATTGGTGCCGACTTTGTCACGGAAAACAACTT 26570 32 100.0 36 ................................ CAGGACTCTTAATTGATTTAAGGTGAAAAACTCGCC 26502 32 100.0 33 ................................ TTGCCGTATCCGACTTTCTCAGCACAGTCAGGC 26437 32 100.0 36 ................................ ACCTACACGTATTAATGGGTCAAAACAAAATCAAAA 26369 32 100.0 33 ................................ AGTACAGAGTCATTAATTGGCTCTTCTGAACTC 26304 32 100.0 33 ................................ GAGCGGAAAGCCTCGCTTCGTCCGGGGAGTAAA 26239 32 100.0 33 ................................ CGGGTTAACAAAAGATGGACCATTGAGAAAGTT 26174 32 100.0 34 ................................ GTTTTGGTTGCCGCTGCTAAACGAAGGCTACTAC 26108 32 100.0 36 ................................ AGGGGCATGTCGTTGATTTGCGGCATCCTAGCGAGA 26040 32 100.0 36 ................................ GGTCCGTTTTTGCGACCGTGAATGATGTCGGACAGA 25972 32 100.0 38 ................................ TCCATGAAGAAAAAGCCGACGAAATTAGGACGATACAG 25902 32 100.0 33 ................................ CCATAAATCCGTAGTACTGGTAAAAAGTCCTTT 25837 32 100.0 34 ................................ CGTACGCGTCCTCGGTGTAGTTATCGTATGCGTA 25771 32 100.0 36 ................................ GATAGCTGTGGTAAAGGTGTATTGTTTGCTGGACAC 25703 32 100.0 35 ................................ CAGAGAGCTAAAAAACTTACTATTGACGGTATTGC 25636 32 100.0 33 ................................ TTTGAATGCCTTTCGGTGTATAAAGTACTCCAA 25571 32 100.0 35 ................................ AAAAAACGCCCAAACCCTCTACCTCTGGACTGAAA 25504 32 100.0 34 ................................ CGATTGATAATTCTTTAACAATTGTCGTGTAAAT 25438 32 100.0 35 ................................ GTACTCATTTTTGGTTGCTTTGTTTTGTTGCTTTA 25371 32 100.0 33 ................................ CATTTCCAGAGTGTATCGCGCCATATACTGCAT 25306 32 100.0 34 ................................ TAGTGGCGCCAGATCGTAAATTCATCATCATTAC 25240 32 100.0 34 ................................ ACATGCGTTATATCGTTGTGAGCCACAATTCTGC 25174 32 100.0 34 ................................ CCGCGGTCATTAAGCCGCCAAAACGAGCGGACTT 25108 32 100.0 34 ................................ CTCTTTTTAGTAGTGACAGTTTTTTCAGGTACGT 25042 32 100.0 33 ................................ CTTTTTCGTTTTTCAACGTTTTATGAAGAATAC 24977 32 100.0 35 ................................ GTTATTAAACAATCGCAACTCACTCAGTTTTTGCG 24910 32 100.0 38 ................................ AGTAGTTAAAGTTAAGGATGTCTGATGTGTAGTCCAAG 24840 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 28 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : GACTCACCCTCTTCAACGTGCTTTAATTGGAATGTCAACACAAAACTGGACAAATTTTTAAAGGTGTAAGGCTTTGTAATCGACGGGTGATTGATAGTCGAGTGAACCATGGAGGCGTATATGGTTGAACCAATGAACATAATCAAATAAAGCAAGGTCAAGTTCGTGTTGGTTAGGGAAAACCCTTCTCGATACAAACTCAATTTTAATCGCTTTAAAGGTGGCTTCTGCGACGGCGTTGTCATACGGCGTGCCTTTGTTGTTGAGCGAACGGGCGATTCCAAAGGTCGCTAGTGTCTGGTCCATCTTCTGATTGATAAACTCTCTACCACGATCGGTATGAAACAGAGCGATCTTCTGTAAGGGATAGGAAATTTTAGCGGTGGCTTGTCCCACGAGCTCCTTATTCTTGTTTGGACCAGAACTGTAACCGATGATTTCACGGTTGTATAGATCAATGATGATACAAATATAATGCCAGTTTGCACCGACCCGCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 29025-27396 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29024 32 100.0 34 ................................ ATGTTAACCGCTCCTTTGTTTTATCGTTAATGCT 28958 32 100.0 33 ................................ ATTATTAATTTCAAGCTTTTCTTTAGTTATTAA 28893 32 100.0 35 ................................ ATCGTTTCGAGAGATATTGAGCGATCTGTTGAAAT 28826 32 100.0 35 ................................ TTCTATTAATAGCCTATTCAGGATGCCGTGTAGGT 28759 32 100.0 33 ................................ GACCACACTTTGAAAGATGCTCTTGCATCAGCC 28694 32 100.0 34 ................................ TGTGCGCGTGGTGGCATTAAACACACCAGTTAAC 28628 32 100.0 36 ................................ CATGCCGTGTAGACGGCCAGAACCGCGACAGCAAGG 28560 32 100.0 33 ................................ TAATTAAATCTTTTGCATCCTTCTTGCTGCGAC 28495 32 100.0 34 ................................ CCATCGTTATGCTTTTTCGCATAATCTAGAAAGC 28429 32 100.0 34 ................................ AGAGGGTGCACAGAAATTCTTTTTTACGAGTGGA 28363 32 100.0 34 ................................ GTTTCACGGGCGGCTGCGAAAGGTCAGCATTTAA 28297 32 100.0 35 ................................ TATGTTAAATCCGACCGTAAATACATCCGTTAAAC 28230 32 100.0 35 ................................ GTAAGCCCGGCCGTAAATGGATTGATCCAGTACTA 28163 32 100.0 34 ................................ CGGCATAACAAGGTACTTTGCCGGGAAAAGAACT 28097 32 100.0 34 ................................ CATAAAGGACAAAACTGCATACGGTTATTTATAT 28031 32 100.0 36 ................................ TATGAAAAAAGTTTTGTTACCAATGTCATTATTTAT 27963 32 100.0 35 ................................ AGTAGACAGAGGTTGGATTTGTGGAAACGCGAGGA 27896 32 100.0 35 ................................ ACGATTGTGCTGGCGTCCCAAAGCTCCAAATCGTG 27829 32 100.0 34 ................................ TGTAGCGTCATATTTTCTTGCGCTTTGGTTAAAG 27763 32 100.0 34 ................................ AGCGGGTATTTAAAGTTCCGAAAGAGACGGCCCA 27697 32 100.0 36 ................................ CCGCGTTCGTGATAGTTACGGCCTCGCCCACCTTAA 27629 32 100.0 35 ................................ ATACAGGCGAAGGGGCTCCGGAAGCAACACTAGGG 27562 32 96.9 35 ..............................T. TCCCTTTTGACTCGAAAGAAAAAGCGGAATGCTTT 27495 32 100.0 36 ................................ CATGTAGCTTTTATTGACTGGTATTACTTCGATCAC 27427 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.9 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : TTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATAGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 40334-39367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 40333 31 100.0 37 ............................... TGAACTGATCTGTAATAGAGTCAAGTTTGAACGAAAA 40265 31 100.0 35 ............................... CTCTGGGCAATATCGTTAGCTGCACGCTCAAACTA 40199 31 100.0 36 ............................... AACTCCCGCCGCTATGCCCGGCGGGTGGCGTTATTA 40132 31 100.0 35 ............................... AAGTACTGGAAACCATTTGCATTTAGAACATTTAA 40066 31 100.0 34 ............................... GTACGAAATACACGCCAAAGGTAACTGGAAAAGA 40001 31 100.0 35 ............................... GTAAACCGAATTTAAATAGATCAGCATATTCCATA 39935 31 100.0 37 ............................... ATCAAAATGCAGTCCATAACTAAATTTATGGATCAAA 39867 31 100.0 36 ............................... TGTATGCAGCAACTCTCCCTCAGCACTAAAAAACCA 39800 31 100.0 34 ............................... GCTTATGTCGCCTGTCAACGTGTAACCAATTGCA 39735 31 100.0 37 ............................... AAACATGTGTTAAATACAGCAAAAGCGCCTGAAGAGA 39667 31 100.0 36 ............................... TTTTAAGTTAATGGAAAGTCATAAAGTACTTCAGGA 39600 31 100.0 36 ............................... GTCGAGGATTTCATCATCAACGCCGCCCATTAAGAA 39533 31 100.0 36 ............................... TTAATTTAATTTTGGCGTTTGAACGATACTTCTTGG 39466 31 96.8 38 ............T.................. AAGAATTGATGGGTAACCATGAGCGGAGTTGATCAGCG 39397 31 83.9 0 ............T.GT..........A...A | ========== ====== ====== ====== =============================== ====================================== ================== 15 31 98.7 36 TCGCACTCCTTGCGAGTGCGTGGATTGAAAT # Left flank : AGAGTGGAGGCGTTAACGAGTCGATATGGCGGATACGTCGATTCTGATATGATATTCTCTGCATGTGAGATGGCGAGCTTGGTACAAACGACTTCTTCTGGCTTGTACTGGAGTGAAATAAGCCGATACTCGAATAGAAGAAAAAAGAAAATGGATTTTGGTGGTTTGCTTGGTGCGATGACGTTTGAGGGAGACATGTATCACTTTGCTCCATGGTTATATGCCGCAAGTTGTCTACATATTGGTAGAAATGTTACCTTCGGCTATGGTCAACTTGATGTTGTGTTTGGATAAATGAGAAATCTTGTTTGAGCATCATGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCGGCGGATTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCTA # Right flank : TATATTTAGATTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGTCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAGGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCTTGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 49018-47788 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCB01000032.1 Alkalihalobacillus clausii strain 7538 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 49017 32 100.0 34 ................................ CATACCCTTTTGAACTTTCACATACTCCACGGGC 48951 32 100.0 33 ................................ ACTTTCCACAGCGCTCACAAAACGCGCCTTGTC 48886 32 100.0 32 ................................ ACAGCTTCACGCATGCCTATCCACTGTGGTGA 48822 32 100.0 38 ................................ AAGAAGGATTTCAACCAAATGACAGATGAAGAATTATT 48752 32 100.0 36 ................................ AGAGAGTTGATGATATTGACCGAAGGCTAAAAGCAT 48684 32 100.0 35 ................................ CTGGTTCGCCTAGGAAAACGATAATAGAACGATAT 48617 32 100.0 33 ................................ GGAAACGACTACAAGAGTTCGGAGAGGTCGCGG 48552 32 100.0 37 ................................ GCGCCCAGCCAATTGGTTAAAAATCATCGTAGCAGTT 48483 32 100.0 38 ................................ GTCAAATTGCTCGCTTATCTCCGCGGCGAGGACGAAGC 48413 32 100.0 34 ................................ TTGCCACTCAAGAATCCACTGGCCAAGATCTTGG 48347 32 100.0 34 ................................ AACGTCGCTTGACGCTTACTGCTTACGCATAGTC 48281 32 100.0 35 ................................ ATCAGACTAAACAGAAAGGTCTCAGAATGGTGGGA 48214 32 100.0 33 ................................ ATCGGTAAATTCGCGGAAAGAACGGATAGGGTA 48149 32 100.0 34 ................................ CACGCGCTTCTTGACGAGATATTTCGCGCCGCCT 48083 32 100.0 34 ................................ TTAACACCCTTTTTGTTTTTTAATTTTGGGTACA 48017 32 100.0 34 ................................ GCTCAACTCGTCATAAAACTCAAACGGAAACATG 47951 32 100.0 34 ................................ TTAAAGGTCCCGTCCCCAAAAAGAATGTCGTACT 47885 32 100.0 34 ................................ AATTTCAGCAGCGGCCAACATGCAATCTTTCTTT 47819 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ====================================== ================== 19 32 99.8 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGCTTTGTATTTTGGAGGAAATCACGTATTTTGAGTGGCGGTGGGGCCAGTGTTTGTGGAATTGGCGATTGCTTGCAAAAAGACATTAGATTTTAATCTATGATAATTAAAATGGAGGACGTGATATAATTTGTATAGTCTCACTCGTAGAGCAATTGGCTGAGTTTAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTGCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATGCTATAATTGAAGCACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGAAGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGAGGCTCAGGTGGATTATTCGTACCACTGGCCGATCCCCCTTGTAGGGAACCAAGCTATTGTTTGACTGGAGGTGTACCAGCACCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //