Array 1 1766139-1765906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZS010000001.1 Bifidobacterium adolescentis strain D31t1_170403_E3 NODE_1_length_1850635_cov_84.4377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1766138 33 100.0 35 ................................. TCGTCAATAAAGCCAGTCTCGCAAATATCATCAAT 1766070 33 100.0 32 ................................. TTCGGCACCGCGAAAGGCGGAGGAACGCACAA 1766005 33 100.0 34 ................................. ACGATAAGCGTGTACGACCGGACCTTCACTACCG 1765938 33 84.8 0 ....T........T.....A....T.....G.. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.2 34 GTCGCATCCCATACGGGATGCGTGGATTGAAAT # Left flank : GTCGTAGCCGGTCTCCGCGCGGAGCCTGTCGTGCACGCGTCTGGCGGTGTGGCGCTGCTTGCGTGGCGGCATGCGGTCGGCCTCGAGCCATCCGTCGACCAACGCCGCGTACGGGTCGATCTTGGAGCCGCGGCGCCTGTCCGTGGGCGGTTTCGGCGTCATGTCGTCCATGTCGGCGTATTTCGCGACAGTGGCGCGGTCCACGTCCGGCCTCCTCGCGATCTCCGACCTGGACACTCCCTGACGGTCCAGTCTCCTGATATCTTGCCGTTTGGGCATCGGTATCGCCATCGTCCTTTCCTTCCCGAGCGCCGCCGGCTGCAGCCGGCGGATTCGTTTTTGGGCTGCGTCTCGGGAATATACAGGCACGGCGGGCTGGTGCCTGTTTTCGTCTGGGCGGTCATATGGTGCAGTTTCCGCTGGAAACCAGCAGCCTATGCTGCGGAAAAACGGTGCAGAAATTGCTTAAGAAAAATTGAAGCAAAACAGGTTAAGCAGTT # Right flank : GGTCCGCTTTTGAACTGCCGTTTTTTGATTTATCGCTCACTTCACATGACATATGTCGGTTTGGTCAGTTAATTTGTGAATATTCGACCATACGACTAGAGTGGCCTGTGGCTTTCCGGTCGGCTTCTTTGCTGGCTGGAAGTTTTGCACAGACTTGATTTGTATCTGCCGTGTGCCTGCGTTGTATTTACATCGCGCCAGCATGTGTGCGGAAGCAGATCGCAAGCGAATGGTTCTCAGTACCATCCATGTGAGTCAAGCACACATCTTTTGAGAAGCAGTCGCGATGCCGGGAGTCGGGTTCGTCGTAATTCAAACGTCGCGTCCGTTCCCGGTTTTTTTATCTGGCATACGGTGTCACTGCGGGAAGTGAGAATGAGTTCCGCGCCCGCTACGATGAACAGTGCAAACGATTATTACTTGTGTGTGTGGGGGTCGGCGTTCTAATCTGCGGATGGCGGAATCAATTTACCCGATTGGTGCTCATCTTCGCGTTCTCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1770157-1767846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZS010000001.1 Bifidobacterium adolescentis strain D31t1_170403_E3 NODE_1_length_1850635_cov_84.4377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1770156 33 100.0 34 ................................. ATCAATCGTATGCGCTACTGGTGCGCCGTGGCCA 1770089 33 100.0 34 ................................. CCAGGCATCGGAAACGACATCATCGACCACGATC 1770022 33 100.0 34 ................................. TATACCCAAAAATGGCAACAGAAGCACGATGGTG 1769955 33 100.0 34 ................................. CTCCGGCGACAGACACGCGACGATCGACTATTCG 1769888 33 100.0 34 ................................. TTTGATGATACCGCCTACAGGCCGAGCCCGCCGA 1769821 33 100.0 35 ................................. TGCAGCATCGTGCCGAATTCGCTGCGCAATTGCGG 1769753 33 100.0 32 ................................. AACCGATCGACATGCAGGACATCGACGCGAGG 1769688 33 100.0 34 ................................. ATCAAGGAATCCAACGACATGGTCACCGACCTCG 1769621 33 100.0 33 ................................. TACGTGCCAGGCTTAAGCCGTCTTTCCCGACGA 1769555 33 100.0 33 ................................. CGGCATTCGACCGGTACGCCATATGCTGACAAG 1769489 33 100.0 34 ................................. AGGAAATGGCGAACACTCTGAAGTCTCTGCCAAT 1769422 33 100.0 33 ................................. AATCATATGATTGATTGGCGTGGCGACTGCTAC 1769356 33 100.0 33 ................................. ACAATGACGAGCCGCGAATCACGCCACGTGATG 1769290 33 100.0 33 ................................. TTGCCGGACACGCCGAACAGCGTGGCGGTGATA 1769224 33 100.0 34 ................................. AATAACGCTCAGATTCTCAACATGATTCGCAACG 1769157 33 100.0 34 ................................. GACGAACTGATGACACAAGGCTTCGAACAAGTCC 1769090 33 100.0 36 ................................. CTTTTAGTCTGGATTAGAAATCAGTGTCGTTTCCGA 1769021 33 100.0 34 ................................. ATCTCCTGCGTTGGCCATTGTCGTTCCTCCTATT 1768954 33 100.0 35 ................................. ATCGCATTGAGCACTTGCAGTCGGCGCTCGAAACT 1768886 33 100.0 34 ................................. ATTGCTCAGAAAGCGCAGGTTGTCTGGGAAAATC 1768819 33 100.0 34 ................................. TTTTCCGTCGAAGTCGTGCCGCCCCCTTCGCCTA 1768752 33 100.0 34 ................................. ATGGACCCGCAAACCGGGTCGATGAACGTGTCAA 1768685 33 100.0 34 ................................. AAGTCTCGAATTGCCATCGAAGCCGCGGTTGTCG 1768618 33 100.0 36 ................................. AGCACTAGGATGAACGCCTTTCTTTGCTTCGCTGAG 1768549 33 100.0 33 ................................. ATTCCAACGGTTTAACCTCACTTGAGGGTCACT 1768483 33 100.0 33 ................................. TTTTTGCGCCGTCCTGTCAAGTCTTTTTATTTT 1768417 33 100.0 35 ................................. CTGCCGCAGCGTGACGAGCTGGTCACGCAGGATAT 1768349 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 1768282 33 100.0 33 ................................. CACAAGTCTCGCTTATAACTTAGGACACTAGAG 1768216 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 1768149 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 1768081 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 1768013 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 1767945 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 1767878 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ==================================== ================== 35 33 99.7 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCTCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTGCGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //