Array 1 50-2258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSN01000009.1 Salmonella enterica strain CVM 43822 43822_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 111 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 172 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 233 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 294 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 355 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 416 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 477 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 538 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 599 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 661 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 722 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 783 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 844 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 905 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 966 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1027 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1088 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1149 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1210 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1271 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1332 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1393 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1454 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1515 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1577 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1680 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1741 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1802 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1863 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1924 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1985 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2046 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2107 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2168 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2229 29 96.6 0 A............................ | A [2255] ========== ====== ====== ====== ============================= ========================================================================== ================== 36 29 99.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //