Array 1 2047840-2048533 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP041994.1 Streptococcus suis strain INT-01 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2047840	    36	 100.0	    30	....................................	TCGACAATTTGGATATGTCCCAATCCTTTC	
   2047906	    36	 100.0	    29	....................................	TGGCCAAACGTGGGATCAAAACCATGTTG 	
   2047971	    36	 100.0	    30	....................................	CTAAGATAAATAATATCCCAATTAATACTG	
   2048037	    36	 100.0	    30	....................................	GAACTTTTTTAGCAAATTTCAAAAAAGTTT	
   2048103	    36	 100.0	    30	....................................	TAATTATCTCTTTGGACCGCATCGTGGCCA	
   2048169	    36	 100.0	    30	....................................	TAGTAACAAATAAAGAAGTAAAAGAGGAAA	
   2048235	    36	 100.0	    29	....................................	GGATTATTGAGTGGGTTAACATCTGCAGG 	
   2048300	    36	 100.0	    30	....................................	AACATCAATGTATTTCTTTTCGACCTTGTC	
   2048366	    36	 100.0	    30	....................................	CACTTCCTTACGCTACTAATTTTCAGTTAA	
   2048432	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
   2048498	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [2048520]
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.5	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG
# Right flank :  ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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