Array 1 502901-505139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENRK010000001.1 Clostridium perfringens strain CHD10481P CHD10481P_seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 502901 29 100.0 36 ............................. TTTCAATTGTATCTTTGTCAATCTCTAACTCTTTTT 502966 29 100.0 37 ............................. AAGGAAAATAATGCAGCTAGAACGCTTTCTGAATCTC 503032 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 503097 29 100.0 36 ............................. ATTATTGTAAAGTAATACTAAGAAATACTAAGTATA 503162 29 100.0 37 ............................. TTATTTATAATCTTAAAAATAAAGAGGGAAGCTATGG 503228 29 100.0 36 ............................. AGTTGATATTTGGAGTAAAGATGGAATTGAAGCTAG 503293 29 100.0 36 ............................. AAGAAGAACTTTACAATGCATTAAGAGAAGAATGTA 503358 29 100.0 36 ............................. ATGTTAGCTTTGAAAATGCTATAATTGGTACAAGTA 503423 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 503488 29 100.0 36 ............................. TATAAATTTGTTAAATATAATCCTTATACGATAGAA 503553 29 100.0 36 ............................. TCCCTTCTTCTTTCCACATTTTATATCCTGTAATGG 503618 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 503683 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 503748 29 100.0 32 ............................. CTCCTAAATCACAATCTTTAAAAGACAATTCC 503809 29 100.0 36 ............................. CTTATAGCTGCATTGATAGGTGCTTTAATAACTCCT 503874 29 100.0 36 ............................. TGTTAAAGTAGGATATTTTAGAGAGTTTGGAACTAT 503939 29 100.0 36 ............................. AGTAATGATAATAGATTAGATGATAACTTAAACTGT 504004 29 100.0 36 ............................. AAAGAGTAAAGGCAGATACTTTTGTTTCTCCTTTGC 504069 29 100.0 37 ............................. ATTACCATATTTTTCTCTTAATCTTAAAAGTTCTTCG 504135 29 100.0 36 ............................. CTTATAGGTGATGAACCTGATGAACTTGTAGCATTA 504200 29 100.0 36 ............................. TTTTAATAGTATAGGAGATGAATTAGAATGAGAAAG 504265 29 100.0 36 ............................. TTGTCTGAACGAATATCTATGTTATAAACTTTATTA 504330 29 100.0 35 ............................. ACGAAACCAAAAGAACAATAATACTTTTCCATTTT 504394 29 100.0 36 ............................. TGTTAAAATCATCTTCATTCATGATTTGGAAAGCCT 504459 29 100.0 36 ............................. AACATTGGTGTACATTTAACACTTAAAGATTTTAAC 504524 29 100.0 36 ............................. AATGTTTGTGTCCAATCTCTACTAAATGCTCCTTTG 504589 29 100.0 36 ............................. ACTAATTTCATTGAAATACCTCCTAATAACTAACGT 504654 29 100.0 36 ............................. TGTAATCTCTACATGTACTATGACACCCAACAATTC 504719 29 100.0 37 ............................. GGAGTTTTACTTTTCTTTATATCTTTTCTTTTCCATG 504785 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 504850 29 100.0 36 ............................. AAAAGTTATCAACAAGAATTAAGGGATATATCTCAA 504915 29 100.0 36 ............................. TAGTTTTGGTAAAGTTAATAAGATATTAAAGAAACA 504980 29 100.0 36 ............................. ATTTTTTGCTCTAACCCTTGCCTTCCCATTTAAGCG 505045 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 505111 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 35 29 99.2 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAAATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTAGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTTAACTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //