Array 1 110-1037 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBG02000011.1 Pseudomonas aeruginosa strain PABL090 NODE_11_length_137654_cov_58.6676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 110 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 170 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 230 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 290 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 350 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 410 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 470 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 530 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 590 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 650 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 710 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 770 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 830 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 890 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 950 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1010 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-1818 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBG02000051.1 Pseudomonas aeruginosa strain PABL090 NODE_51_length_42665_cov_54.0213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 170 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 230 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 290 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 350 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 410 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 470 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 530 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 590 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 650 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 710 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 770 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 830 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 890 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 950 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1010 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1070 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1130 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1190 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1251 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1311 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1371 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1431 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1491 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1551 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1611 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1671 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1731 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1791 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11749-10344 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBG02000051.1 Pseudomonas aeruginosa strain PABL090 NODE_51_length_42665_cov_54.0213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11748 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 11688 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 11628 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 11568 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 11508 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 11448 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 11388 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 11328 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 11268 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11207 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11147 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11087 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 11027 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 10967 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 10907 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10847 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10791 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10731 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10671 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10611 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 10551 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10491 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10431 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10371 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //