Array 1 1173227-1174094 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UFRM01000001.1 Actinobacillus lignieresii strain NCTC4189, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
   1173227	    28	 100.0	    32	............................	AAAATGAGTGACATAGTTAATCATTTACTTGA	
   1173287	    28	 100.0	    32	............................	TGATAAGGTTCTTGAATAAATCCTGATTCTTG	
   1173347	    28	 100.0	    32	............................	ATCCGTCATTAAGCCGAAAACGCCAAATTAAG	
   1173407	    28	 100.0	    32	............................	ATTTTTTCTTCCCTTTCAGCGCACCACGATAG	
   1173467	    28	 100.0	    32	............................	ATAGTTCAGTCCTTTCTTATGTGATGAAAAAT	
   1173527	    28	 100.0	    32	............................	ATTCGAGCATCCGCAATATTGCGTTGTTTATT	
   1173587	    28	 100.0	    32	............................	TAGAACCCGAAGCTCGTAGTCGCTATGAAATC	
   1173647	    28	  96.4	    32	....T.......................	ATGCAAGCGGTCATTTTTTGATAGCAGATTGC	
   1173707	    28	 100.0	    32	............................	AGTTTTTGAGTTGTCTACGCAACTTAAAAGGA	
   1173767	    28	 100.0	    32	............................	TGATGAAATCATTAACAGCCCGATTGCCCGTG	
   1173827	    28	 100.0	    32	............................	GCAACGTCCTTGCCGCAGACAACATCAATATT	
   1173887	    28	 100.0	    32	............................	GTATATATGGCAAACCAAGGCTTTATAACTTA	
   1173947	    28	 100.0	    32	............................	AACAATTCGCACAATGCCATCTTCGATAGAAT	
   1174007	    28	 100.0	    32	............................	GCCGGAACCTAAAAGAATTGATAAAGACACAC	C [1174015]
   1174068	    27	  89.3	     0	.....................-C.C...	|                               	
==========	======	======	======	============================	================================	==================
        15	    28	  99.0	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA
# Right flank :  ATCAACAGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCGATGCGAAAACTGTCAAAAGCAGGGGTTATGGTTGGTTTCTGTAGCGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTGCTTCGAACTTGGAATAAGTTT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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