Array 1 948799-950840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZD010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948799 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 948860 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 948921 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 948982 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 949043 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 949104 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 949165 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 949226 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 949287 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 949348 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 949409 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 949470 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 949531 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 949592 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 949653 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 949714 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 949775 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 949836 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 949897 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949958 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 950019 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 950080 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 950141 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 950202 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 950263 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 950325 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 950386 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 950447 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 950508 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 950569 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 950630 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 950691 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 950752 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 950813 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 966973-968510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZD010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 966973 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 967034 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 967095 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 967156 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 967217 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 967279 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 967340 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 967401 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 967462 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 967523 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 967584 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 967645 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 967706 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 967767 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 967828 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 967889 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 967950 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 968012 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 968115 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 968176 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 968237 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 968298 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 968359 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 968420 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 968481 29 96.6 0 A............................ | A [968507] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //