Array 1 470804-471380 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJR01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039527 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470804 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 470865 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 470926 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 470987 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 471048 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 471109 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 471170 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 471231 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 471292 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 471353 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487517-489317 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJR01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039527 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 487517 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 487578 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 487639 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 487700 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 487761 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 487822 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 487883 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 487945 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 488006 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 488067 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 488128 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 488189 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 488250 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 488311 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 488372 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 488433 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 488494 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 488555 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 488616 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 488677 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 488738 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 488799 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 488860 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 488921 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 488982 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 489043 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 489104 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 489165 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 489226 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 489288 29 86.2 0 TAA.........T................ | A [489312] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //