Array 1 35039-36207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQR01000029.1 Pseudomonas aeruginosa strain PA_151970 NODE_30_length_46698_cov_7.88886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35039 28 100.0 32 ............................ TGGTGGGAAAAGGCCGAAGACCAGCTGCGCTG 35099 28 100.0 32 ............................ TTCAACGAGCGGAGGGGGCGCCGGTGAGTAAC 35159 28 100.0 32 ............................ GTTATGCACGGCATCGAGGTGGCGCGCGCTAT 35219 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 35279 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 35339 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 35399 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 35460 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 35520 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 35580 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 35640 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 35700 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 35760 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 35820 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 35880 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 35940 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 36000 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 36060 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 36120 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 36180 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46311-45082 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQR01000029.1 Pseudomonas aeruginosa strain PA_151970 NODE_30_length_46698_cov_7.88886, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46310 28 100.0 32 ............................ AAGAAGGACGCCGAGATCGACGGCCTGAAGGG 46250 28 100.0 32 ............................ TGGCCGGCGCATCCCGCCAGCGCAACCATCAC 46190 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 46130 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 46070 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 46010 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 45950 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 45890 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 45830 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 45770 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 45710 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 45650 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 45590 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 45530 28 100.0 32 ............................ TCGATGCCCGGCCAGGGTGCCCCCGCTTTCGC 45470 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 45410 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 45350 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 45290 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 45230 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 45170 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 45109 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 354-1582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQR01000066.1 Pseudomonas aeruginosa strain PA_151970 NODE_9_length_209020_cov_7.66286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 354 28 100.0 32 ............................ CTTCGGAAACAGCGGCTGCAACCGCTCCGAAG 414 28 100.0 32 ............................ TGTTGAGGGGCGAGGCGAGGGATTGCCCTGTT 474 28 100.0 32 ............................ GACAGCGCATCGCGGAAGCGGTCGAACTCGGC 534 28 100.0 32 ............................ TGATGGCGACGGTCAACCCCTGGCGTCGGTTC 594 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGGTGGAAGCCCAGGC 654 28 100.0 32 ............................ ACGGCCACACAACCAGTCGGAGACAGCTTGGT 714 28 100.0 32 ............................ TCGGTGGGGACGCCAGCGGCTCGACAACGTTC 774 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 834 28 100.0 32 ............................ GATGGCGTTGCCCGTGCCGCCTCGGGCCAGGG 894 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 954 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1014 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1074 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1135 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1195 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1255 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 1315 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1375 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1435 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 1495 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1555 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.8 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACGACAAGCAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //